Variant report

Variant	rs10051352
Chromosome Location	chr5:35721990-35721991
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10036879	0.83[AFR][1000 genomes]
rs10043797	0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs10044455	0.85[YRI][hapmap]
rs10045110	0.84[YRI][hapmap]
rs10054231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10058394	1.00[CEU][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10061088	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10064115	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10067721	0.97[AFR][1000 genomes]
rs10068174	0.89[YRI][hapmap]
rs10069273	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10069346	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10069609	0.85[YRI][hapmap];0.89[AFR][1000 genomes]
rs10071844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10071847	1.00[CEU][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10077049	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10077176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10079960	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12332369	0.91[YRI][hapmap]
rs13357738	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs28619956	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6451210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6862961	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs6870518	0.85[YRI][hapmap];0.97[AFR][1000 genomes]
rs6878544	0.82[YRI][hapmap]
rs6891096	1.00[CEU][hapmap]
rs6893143	0.94[AFR][1000 genomes]
rs6895275	0.85[YRI][hapmap]
rs73084316	0.89[AMR][1000 genomes]
rs73084342	0.89[AMR][1000 genomes]
rs7702273	0.84[AFR][1000 genomes]
rs7703587	1.00[CEU][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7703605	1.00[CEU][hapmap]
rs7714298	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7714839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7715524	0.91[YRI][hapmap]
rs7734377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7735585	0.84[YRI][hapmap]
rs9292602	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv515831	chr5:35706279-35723861	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35721800-35723800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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