Variant report
| Variant | rs6893143 |
|---|---|
| Chromosome Location | chr5:35715311-35715312 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:35697548..35700372-chr5:35714640..35716643,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:40)
| rs_ID | r2[population] |
|---|---|
| rs10036879 | 0.83[AFR][1000 genomes] |
| rs10038652 | 1.00[AMR][1000 genomes] |
| rs10038679 | 1.00[AMR][1000 genomes] |
| rs10043797 | 0.81[AFR][1000 genomes] |
| rs10044455 | 0.81[AFR][1000 genomes] |
| rs10045110 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10051352 | 0.94[AFR][1000 genomes] |
| rs10054231 | 0.94[AFR][1000 genomes] |
| rs10056622 | 1.00[AMR][1000 genomes] |
| rs10058394 | 0.94[AFR][1000 genomes] |
| rs10060953 | 1.00[AMR][1000 genomes] |
| rs10064115 | 0.84[AFR][1000 genomes] |
| rs10064633 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10067721 | 0.97[AFR][1000 genomes] |
| rs10069346 | 0.94[AFR][1000 genomes] |
| rs10069609 | 0.89[AFR][1000 genomes] |
| rs10071844 | 0.94[AFR][1000 genomes] |
| rs10071847 | 0.94[AFR][1000 genomes] |
| rs10072859 | 1.00[AMR][1000 genomes] |
| rs10077049 | 0.80[AFR][1000 genomes] |
| rs10077176 | 0.94[AFR][1000 genomes] |
| rs10078771 | 1.00[AMR][1000 genomes] |
| rs10079960 | 0.97[AFR][1000 genomes] |
| rs10080148 | 1.00[AMR][1000 genomes] |
| rs12332369 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13357738 | 0.84[AFR][1000 genomes] |
| rs16902279 | 1.00[AMR][1000 genomes] |
| rs2131989 | 1.00[AMR][1000 genomes] |
| rs28619956 | 0.80[AFR][1000 genomes] |
| rs6870518 | 0.97[AFR][1000 genomes] |
| rs6877678 | 1.00[AMR][1000 genomes] |
| rs6884516 | 1.00[AMR][1000 genomes] |
| rs6895275 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7702273 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7703587 | 0.89[AFR][1000 genomes] |
| rs7714298 | 0.94[AFR][1000 genomes] |
| rs7714839 | 0.94[AFR][1000 genomes] |
| rs7715524 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7734377 | 0.94[AFR][1000 genomes] |
| rs9292602 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv525477 | chr5:35530905-35792990 | Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv515831 | chr5:35706279-35723861 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:35697000-35717000 | Weak transcription | Left Ventricle | heart |
| 2 | chr5:35699400-35720600 | Weak transcription | Monocytes-CD14+_RO01746 | blood |
