Variant report
| Variant | rs6877678 |
|---|---|
| Chromosome Location | chr5:35567453-35567454 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:35567368..35569385-chr5:35586004..35588708,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10038652 | 1.00[AMR][1000 genomes] |
| rs10038679 | 1.00[AMR][1000 genomes] |
| rs10045110 | 1.00[AMR][1000 genomes] |
| rs10056622 | 1.00[AMR][1000 genomes] |
| rs10060953 | 1.00[AMR][1000 genomes] |
| rs10064633 | 1.00[AMR][1000 genomes] |
| rs10072859 | 1.00[AMR][1000 genomes] |
| rs10078771 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10080148 | 1.00[AMR][1000 genomes] |
| rs12332369 | 1.00[AMR][1000 genomes] |
| rs16902279 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2131989 | 1.00[AMR][1000 genomes] |
| rs6884516 | 1.00[AMR][1000 genomes] |
| rs6893143 | 1.00[AMR][1000 genomes] |
| rs6895275 | 1.00[AMR][1000 genomes] |
| rs7702273 | 1.00[AMR][1000 genomes] |
| rs7715524 | 1.00[AMR][1000 genomes] |
| rs9292602 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv597812 | chr5:35505682-35577257 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv525477 | chr5:35530905-35792990 | Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:35563800-35567800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
