Variant report

Variant	rs10060953
Chromosome Location	chr5:35546894-35546895
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10038652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10038679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10045110	1.00[AMR][1000 genomes]
rs10056622	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10064633	1.00[AMR][1000 genomes]
rs10072859	1.00[AMR][1000 genomes]
rs10078771	1.00[AMR][1000 genomes]
rs10080148	1.00[AMR][1000 genomes]
rs12332369	1.00[AMR][1000 genomes]
rs16902279	1.00[AMR][1000 genomes]
rs2131989	1.00[AMR][1000 genomes]
rs6877678	1.00[AMR][1000 genomes]
rs6884516	1.00[AMR][1000 genomes]
rs6893143	1.00[AMR][1000 genomes]
rs6895275	1.00[AMR][1000 genomes]
rs7702273	1.00[AMR][1000 genomes]
rs7715524	1.00[AMR][1000 genomes]
rs9292602	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027038	chr5:35503887-35556247	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv597812	chr5:35505682-35577257	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35541600-35553400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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