Variant report

Variant	rs10080148
Chromosome Location	chr5:35630614-35630615
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10038652	1.00[AMR][1000 genomes]
rs10038679	1.00[AMR][1000 genomes]
rs10045110	1.00[AMR][1000 genomes]
rs10056622	1.00[AMR][1000 genomes]
rs10060953	1.00[AMR][1000 genomes]
rs10064633	1.00[AMR][1000 genomes]
rs10072859	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10078771	1.00[AMR][1000 genomes]
rs12332369	1.00[AMR][1000 genomes]
rs16902279	1.00[AMR][1000 genomes]
rs2131989	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6877678	1.00[AMR][1000 genomes]
rs6884516	1.00[AMR][1000 genomes]
rs6893143	1.00[AMR][1000 genomes]
rs6895275	1.00[AMR][1000 genomes]
rs7702273	1.00[AMR][1000 genomes]
rs7715524	1.00[AMR][1000 genomes]
rs9292602	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35618600-35633800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:35618600-35646800	Weak transcription	Spleen	Spleen
3	chr5:35618600-35653800	Weak transcription	Lung	lung
4	chr5:35618600-35678000	Weak transcription	Left Ventricle	heart
5	chr5:35619000-35631400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr5:35619000-35632400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr5:35619000-35632600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr5:35619000-35634400	Weak transcription	Primary T cells from cord blood	blood
9	chr5:35619000-35634400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr5:35619000-35638000	Weak transcription	Colon Smooth Muscle	Colon
11	chr5:35619000-35644200	Weak transcription	Brain Hippocampus Middle	brain
12	chr5:35619000-35651400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr5:35619000-35651600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr5:35619000-35652000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr5:35619200-35632200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr5:35619200-35632200	Weak transcription	Fetal Muscle Leg	muscle
17	chr5:35619200-35632400	Weak transcription	Brain Angular Gyrus	brain
18	chr5:35619200-35634200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr5:35619200-35634400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr5:35619200-35634400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr5:35619200-35635400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr5:35619200-35637600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr5:35619200-35639000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr5:35619200-35644000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr5:35619200-35645800	Weak transcription	Small Intestine	intestine
26	chr5:35619200-35646000	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr5:35619200-35649800	Weak transcription	Hela-S3	cervix
28	chr5:35619200-35651400	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr5:35619400-35632400	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr5:35619400-35634000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr5:35619400-35634200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr5:35619400-35652200	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr5:35624200-35634400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr5:35625000-35634600	Weak transcription	Fetal Muscle Trunk	muscle
35	chr5:35625600-35650000	Weak transcription	Right Ventricle	heart
36	chr5:35626000-35633400	Weak transcription	Placenta	Placenta
37	chr5:35626400-35632800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr5:35626600-35632400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr5:35626800-35634200	Weak transcription	NHDF-Ad	bronchial
40	chr5:35627200-35634200	Weak transcription	A549	lung
41	chr5:35627200-35656600	Weak transcription	Osteobl	bone
42	chr5:35628600-35631000	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr5:35628600-35631400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr5:35628600-35632600	Strong transcription	Ovary	ovary
45	chr5:35628600-35633000	Strong transcription	Fetal Lung	lung
46	chr5:35628800-35631200	Weak transcription	Esophagus	oesophagus
47	chr5:35629000-35633800	Weak transcription	Brain Substantia Nigra	brain
48	chr5:35629400-35630800	Strong transcription	Fetal Intestine Small	intestine
49	chr5:35629400-35632000	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr5:35629400-35632000	Strong transcription	Primary hematopoietic stem cells	blood

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