Variant report

Variant	rs12332369
Chromosome Location	chr5:35694454-35694455
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10038652	1.00[AMR][1000 genomes]
rs10038679	1.00[AMR][1000 genomes]
rs10043797	1.00[ASW][hapmap];0.81[LWK][hapmap];0.91[YRI][hapmap]
rs10044455	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10045110	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10051352	0.91[YRI][hapmap]
rs10056622	1.00[AMR][1000 genomes]
rs10058394	1.00[YRI][hapmap]
rs10060953	1.00[AMR][1000 genomes]
rs10064115	0.87[AFR][1000 genomes]
rs10064633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10068174	1.00[YRI][hapmap]
rs10069346	1.00[YRI][hapmap]
rs10069609	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs10071847	1.00[YRI][hapmap]
rs10072859	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs10078771	1.00[AMR][1000 genomes]
rs10080148	1.00[AMR][1000 genomes]
rs13357738	0.87[AFR][1000 genomes]
rs16902279	1.00[AMR][1000 genomes]
rs2131989	0.91[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6870518	1.00[YRI][hapmap]
rs6877678	1.00[AMR][1000 genomes]
rs6878544	1.00[YRI][hapmap]
rs6884516	1.00[AMR][1000 genomes]
rs6893143	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6895275	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7702273	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs7703587	1.00[YRI][hapmap]
rs7714298	1.00[YRI][hapmap]
rs7715524	1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7735585	0.91[YRI][hapmap]
rs9292602	0.91[LWK][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880510	chr5:35659239-35709184	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv881146	chr5:35659239-35714851	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1843371	chr5:35668036-35706279	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35630600-35707600	Weak transcription	Pancreas	Pancrea
2	chr5:35672000-35708600	Weak transcription	Gastric	stomach
3	chr5:35673600-35694600	Weak transcription	Brain Angular Gyrus	brain
4	chr5:35680000-35698600	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr5:35681000-35707600	Weak transcription	Primary T cells from cord blood	blood
6	chr5:35684600-35708600	Weak transcription	Fetal Kidney	kidney
7	chr5:35684800-35703600	Weak transcription	Fetal Intestine Small	intestine
8	chr5:35686000-35694600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr5:35686200-35709600	Weak transcription	Fetal Lung	lung
10	chr5:35689600-35696800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:35691600-35696600	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr5:35691600-35702400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr5:35691800-35704000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr5:35693200-35695000	Enhancers	Brain Hippocampus Middle	brain
15	chr5:35693200-35696800	Weak transcription	Spleen	Spleen
16	chr5:35693400-35696600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr5:35693400-35698200	Weak transcription	Aorta	Aorta
18	chr5:35693400-35698800	Weak transcription	Lung	lung
19	chr5:35693800-35695000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr5:35693800-35714000	Weak transcription	Brain Anterior Caudate	brain
21	chr5:35694200-35696800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr5:35694400-35695000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr5:35694400-35695000	Active TSS	Brain Inferior Temporal Lobe	brain
24	chr5:35694400-35695200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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