Variant report

Variant	rs6870518
Chromosome Location	chr5:35718567-35718568
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10036879	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10043797	0.91[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10044455	1.00[YRI][hapmap]
rs10045110	1.00[YRI][hapmap]
rs10051352	0.85[YRI][hapmap];0.97[AFR][1000 genomes]
rs10054231	0.97[AFR][1000 genomes]
rs10057124	1.00[AMR][1000 genomes]
rs10058394	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs10064115	0.81[AFR][1000 genomes]
rs10067721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10068174	0.88[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10069346	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs10069609	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10071757	1.00[AMR][1000 genomes]
rs10071844	0.97[AFR][1000 genomes]
rs10071847	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs10072859	0.86[YRI][hapmap]
rs10077049	0.83[AFR][1000 genomes]
rs10077176	0.97[AFR][1000 genomes]
rs10079960	0.94[AFR][1000 genomes]
rs10080020	0.80[YRI][hapmap]
rs12332369	1.00[YRI][hapmap]
rs12332521	1.00[AMR][1000 genomes]
rs13357321	1.00[AMR][1000 genomes]
rs13357738	0.81[AFR][1000 genomes]
rs2035995	0.80[YRI][hapmap]
rs2131989	0.93[YRI][hapmap]
rs28562870	1.00[AMR][1000 genomes]
rs28619956	0.83[AFR][1000 genomes]
rs6878544	0.83[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6893143	0.97[AFR][1000 genomes]
rs6895275	1.00[YRI][hapmap]
rs7702273	0.90[YRI][hapmap];0.86[AFR][1000 genomes]
rs7702529	1.00[AMR][1000 genomes]
rs7703587	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs7714298	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs7714839	0.97[AFR][1000 genomes]
rs7715524	1.00[YRI][hapmap]
rs7717371	1.00[AMR][1000 genomes]
rs7728863	1.00[AMR][1000 genomes]
rs7734377	0.97[AFR][1000 genomes]
rs7735585	0.85[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9292602	0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv515831	chr5:35706279-35723861	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35699400-35720600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr5:35718000-35718600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:35718200-35719200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr5:35718400-35718800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:35718400-35719200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr5:35718400-35719400	Enhancers	Hela-S3	cervix

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