Variant report

Variant	rs13357321
Chromosome Location	chr5:35808090-35808091
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10036879	1.00[AMR][1000 genomes]
rs10043797	1.00[AMR][1000 genomes]
rs10057124	1.00[AMR][1000 genomes]
rs10067721	1.00[AMR][1000 genomes]
rs10068174	1.00[AMR][1000 genomes]
rs10069609	1.00[AMR][1000 genomes]
rs10071757	1.00[AMR][1000 genomes]
rs12332521	1.00[AMR][1000 genomes]
rs28562870	1.00[AMR][1000 genomes]
rs6870518	1.00[AMR][1000 genomes]
rs6878544	1.00[AMR][1000 genomes]
rs7702529	1.00[AMR][1000 genomes]
rs7717371	1.00[AMR][1000 genomes]
rs7728863	1.00[AMR][1000 genomes]
rs7735585	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35802200-35808400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr5:35803400-35809400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:35803400-35809400	Weak transcription	Fetal Kidney	kidney
4	chr5:35803800-35810600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr5:35803800-35813800	Weak transcription	Left Ventricle	heart
6	chr5:35804400-35809800	Weak transcription	Spleen	Spleen
7	chr5:35804600-35809800	Weak transcription	Thymus	Thymus
8	chr5:35804800-35809800	Weak transcription	Dnd41	blood
9	chr5:35806400-35808400	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr5:35806600-35808200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr5:35806600-35808400	Enhancers	Primary T cells from cord blood	blood
12	chr5:35806600-35816800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr5:35806800-35808200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr5:35807200-35808200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr5:35807400-35808200	Enhancers	Primary T cells fromperipheralblood	blood
16	chr5:35807600-35808200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr5:35807600-35809800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr5:35807800-35808200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
19	chr5:35807800-35808200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
20	chr5:35807800-35808200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
21	chr5:35807800-35808200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
22	chr5:35808000-35809200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr5:35808000-35810400	Weak transcription	Fetal Thymus	thymus

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