Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10036879	1.00[AMR][1000 genomes]
rs10043797	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10044455	0.85[YRI][hapmap]
rs10045110	0.84[YRI][hapmap]
rs10051352	0.84[YRI][hapmap]
rs10057124	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10058394	0.85[YRI][hapmap]
rs10067721	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10068174	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10069346	0.91[YRI][hapmap]
rs10069609	0.85[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10071757	1.00[AMR][1000 genomes]
rs10071847	0.85[YRI][hapmap]
rs12332369	0.91[YRI][hapmap]
rs12332521	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13357321	1.00[AMR][1000 genomes]
rs28562870	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6870518	0.85[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6878544	0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6895275	0.85[YRI][hapmap]
rs7701519	0.81[YRI][hapmap]
rs7702273	0.84[AFR][1000 genomes]
rs7702529	1.00[AMR][1000 genomes]
rs7703587	0.85[YRI][hapmap]
rs7708334	0.86[YRI][hapmap]
rs7714297	0.84[YRI][hapmap]
rs7714298	0.89[YRI][hapmap]
rs7715524	0.91[YRI][hapmap]
rs7717371	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7720394	0.86[YRI][hapmap]
rs7728863	1.00[AMR][1000 genomes]
rs9292602	0.82[YRI][hapmap]
rs9292610	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35755000-35758600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr5:35758000-35758800	Enhancers	HepG2	liver
3	chr5:35758200-35758800	Enhancers	Primary T cells from cord blood	blood
4	chr5:35758200-35758800	Enhancers	Liver	Liver
5	chr5:35758200-35759800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr5:35758400-35758800	Enhancers	Primary T helper cells PMA-I stimulated	--

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