Variant report

Variant	rs7717371
Chromosome Location	chr5:35764250-35764251
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10036879	1.00[AMR][1000 genomes]
rs10043797	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10057124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10067721	1.00[AMR][1000 genomes]
rs10068174	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10069609	1.00[AMR][1000 genomes]
rs10071757	1.00[AMR][1000 genomes]
rs12332521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13357321	1.00[AMR][1000 genomes]
rs28562870	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6870518	1.00[AMR][1000 genomes]
rs6878544	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7702529	1.00[AMR][1000 genomes]
rs7728863	1.00[AMR][1000 genomes]
rs7735585	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35763000-35766200	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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