Variant report

Variant	rs10069609
Chromosome Location	chr5:35741431-35741432
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10036879	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10043797	0.91[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10044455	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs10045110	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs10051352	0.85[YRI][hapmap];0.89[AFR][1000 genomes]
rs10054231	0.89[AFR][1000 genomes]
rs10057124	1.00[AMR][1000 genomes]
rs10058394	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs10064633	0.86[AFR][1000 genomes]
rs10067721	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10068174	0.88[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10069346	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs10071757	1.00[AMR][1000 genomes]
rs10071844	0.89[AFR][1000 genomes]
rs10071847	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs10072859	0.86[YRI][hapmap]
rs10077176	0.89[AFR][1000 genomes]
rs10079960	0.86[AFR][1000 genomes]
rs10080020	0.80[YRI][hapmap]
rs12332369	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs12332521	1.00[AMR][1000 genomes]
rs13357321	1.00[AMR][1000 genomes]
rs2035995	0.80[YRI][hapmap]
rs2131989	0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs28562870	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6870518	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6878544	0.83[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6893143	0.89[AFR][1000 genomes]
rs6895275	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs7702273	0.90[YRI][hapmap];0.89[AFR][1000 genomes]
rs7702529	1.00[AMR][1000 genomes]
rs7703587	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs7714298	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs7714839	0.89[AFR][1000 genomes]
rs7715524	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs7717371	1.00[AMR][1000 genomes]
rs7728863	1.00[AMR][1000 genomes]
rs7734377	0.89[AFR][1000 genomes]
rs7735585	0.85[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9292602	0.91[YRI][hapmap];0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv968824	chr5:35740416-35743870	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35737400-35743000	Weak transcription	Fetal Kidney	kidney
2	chr5:35739600-35741600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr5:35739800-35742600	Weak transcription	Pancreas	Pancrea
4	chr5:35740400-35742000	Enhancers	HepG2	liver
5	chr5:35740600-35742000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:35741200-35741600	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr5:35741200-35742000	Enhancers	Liver	Liver
8	chr5:35741200-35742000	Enhancers	Hela-S3	cervix
9	chr5:35741200-35742200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:35741200-35742800	Enhancers	NHDF-Ad	bronchial
11	chr5:35741400-35741600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
12	chr5:35741400-35741600	Flanking Active TSS	Osteobl	bone
13	chr5:35741400-35742000	Enhancers	HUVEC	blood vessel

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