Variant report

Variant	rs10072859
Chromosome Location	chr5:35637334-35637335
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35631497..35633128-chr5:35637174..35638792,2	MCF-7	breast:
2	chr5:35619490..35621313-chr5:35634533..35637478,2	K562	blood:

Variant related genes	Relation type
ENSG00000238441	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10038652	1.00[AMR][1000 genomes]
rs10038679	1.00[AMR][1000 genomes]
rs10044455	0.86[YRI][hapmap]
rs10045110	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs10056622	1.00[AMR][1000 genomes]
rs10058394	0.86[YRI][hapmap]
rs10060953	1.00[AMR][1000 genomes]
rs10064633	1.00[AMR][1000 genomes]
rs10069346	0.84[YRI][hapmap]
rs10069609	0.86[YRI][hapmap]
rs10071847	0.86[YRI][hapmap]
rs10078771	1.00[AMR][1000 genomes]
rs10080020	0.80[YRI][hapmap]
rs10080148	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12332369	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs16902279	1.00[AMR][1000 genomes]
rs2035995	0.80[YRI][hapmap]
rs2131989	0.93[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6870518	0.86[YRI][hapmap]
rs6877678	1.00[AMR][1000 genomes]
rs6884516	1.00[AMR][1000 genomes]
rs6893143	1.00[AMR][1000 genomes]
rs6895275	0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs7702273	1.00[AMR][1000 genomes]
rs7703587	0.86[YRI][hapmap]
rs7714298	0.82[YRI][hapmap]
rs7715524	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs9292602	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35618600-35646800	Weak transcription	Spleen	Spleen
2	chr5:35618600-35653800	Weak transcription	Lung	lung
3	chr5:35618600-35678000	Weak transcription	Left Ventricle	heart
4	chr5:35619000-35638000	Weak transcription	Colon Smooth Muscle	Colon
5	chr5:35619000-35644200	Weak transcription	Brain Hippocampus Middle	brain
6	chr5:35619000-35651400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr5:35619000-35651600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr5:35619000-35652000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr5:35619200-35637600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:35619200-35639000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:35619200-35644000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr5:35619200-35645800	Weak transcription	Small Intestine	intestine
13	chr5:35619200-35646000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr5:35619200-35649800	Weak transcription	Hela-S3	cervix
15	chr5:35619200-35651400	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr5:35619400-35652200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr5:35625600-35650000	Weak transcription	Right Ventricle	heart
18	chr5:35627200-35656600	Weak transcription	Osteobl	bone
19	chr5:35630400-35662400	Weak transcription	Aorta	Aorta
20	chr5:35630600-35642800	Weak transcription	Fetal Stomach	stomach
21	chr5:35630600-35663400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr5:35630600-35707600	Weak transcription	Pancreas	Pancrea
23	chr5:35632000-35643200	Weak transcription	Fetal Kidney	kidney
24	chr5:35632600-35639000	Weak transcription	Ovary	ovary
25	chr5:35632600-35644000	Weak transcription	Brain Angular Gyrus	brain
26	chr5:35632600-35652400	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr5:35633400-35642000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr5:35634800-35637600	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr5:35634800-35638200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr5:35634800-35644200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr5:35634800-35644200	Weak transcription	Duodenum Mucosa	Duodenum
32	chr5:35634800-35644600	Weak transcription	Fetal Lung	lung
33	chr5:35634800-35651200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr5:35634800-35651200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr5:35634800-35658200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr5:35634800-35658200	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr5:35634800-35673200	Weak transcription	Brain Anterior Caudate	brain
38	chr5:35635000-35652000	Weak transcription	Fetal Muscle Trunk	muscle
39	chr5:35635400-35637600	Weak transcription	Adipose Nuclei	Adipose
40	chr5:35635400-35640000	Weak transcription	Liver	Liver
41	chr5:35635400-35651000	Weak transcription	Dnd41	blood
42	chr5:35635600-35648800	Weak transcription	Gastric	stomach
43	chr5:35635600-35651200	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr5:35635600-35660400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr5:35635600-35665400	Weak transcription	Fetal Intestine Small	intestine
46	chr5:35635800-35639200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr5:35635800-35664000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr5:35636000-35643600	Weak transcription	Fetal Intestine Large	intestine
49	chr5:35636000-35644600	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr5:35636000-35649800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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