Variant report

Variant	rs7703587
Chromosome Location	chr5:35720488-35720489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10043797	0.91[YRI][hapmap]
rs10044455	1.00[YRI][hapmap]
rs10045110	1.00[YRI][hapmap]
rs10051352	1.00[CEU][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10054231	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10058394	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10061088	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10064115	0.90[AMR][1000 genomes]
rs10067721	0.91[AFR][1000 genomes]
rs10068174	0.88[YRI][hapmap]
rs10069273	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10069346	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10069609	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs10071844	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10071847	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10072859	0.86[YRI][hapmap]
rs10077049	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10077176	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10079960	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10080020	0.80[YRI][hapmap]
rs12332369	1.00[YRI][hapmap]
rs13357738	0.90[AMR][1000 genomes]
rs2035995	0.80[YRI][hapmap]
rs2131989	0.93[YRI][hapmap]
rs28619956	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6451210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6862961	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs6870518	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs6878544	0.83[YRI][hapmap]
rs6891096	1.00[CEU][hapmap]
rs6893143	0.89[AFR][1000 genomes]
rs6895275	1.00[YRI][hapmap]
rs73084316	0.89[AMR][1000 genomes]
rs73084342	0.89[AMR][1000 genomes]
rs7702273	0.90[YRI][hapmap]
rs7703605	1.00[CEU][hapmap]
rs7714298	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7714839	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7715524	1.00[YRI][hapmap]
rs7734377	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7735585	0.85[YRI][hapmap]
rs9292602	0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv515831	chr5:35706279-35723861	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35699400-35720600	Weak transcription	Monocytes-CD14+_RO01746	blood

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