Variant report

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10044455	0.87[AFR][1000 genomes]
rs10045110	0.87[AFR][1000 genomes]
rs10051352	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10054231	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10058394	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10061088	0.80[AMR][1000 genomes]
rs10064115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10064633	0.87[AFR][1000 genomes]
rs10067721	0.81[AFR][1000 genomes]
rs10069273	0.90[AMR][1000 genomes]
rs10069346	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10071844	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10071847	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10077049	0.90[AMR][1000 genomes]
rs10077176	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10079960	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12332369	0.87[AFR][1000 genomes]
rs2131989	0.82[AFR][1000 genomes]
rs28619956	0.90[AMR][1000 genomes]
rs6451210	0.90[AMR][1000 genomes]
rs6862961	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6870518	0.81[AFR][1000 genomes]
rs6891096	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6893143	0.84[AFR][1000 genomes]
rs6895275	0.87[AFR][1000 genomes]
rs73082282	1.00[EUR][1000 genomes]
rs73084316	1.00[EUR][1000 genomes]
rs73084342	1.00[EUR][1000 genomes]
rs7703587	0.90[AMR][1000 genomes]
rs7714298	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7714839	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7715524	0.87[AFR][1000 genomes]
rs7734377	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9292602	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv881146	chr5:35659239-35714851	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv515831	chr5:35706279-35723861	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35693800-35714000	Weak transcription	Brain Anterior Caudate	brain
2	chr5:35697000-35717000	Weak transcription	Left Ventricle	heart
3	chr5:35699400-35720600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr5:35710800-35712400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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