Variant report
| Variant | rs10064115 |
|---|---|
| Chromosome Location | chr5:35712834-35712835 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10044455 | 0.87[AFR][1000 genomes] |
| rs10045110 | 0.87[AFR][1000 genomes] |
| rs10051352 | 0.84[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs10054231 | 0.84[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs10058394 | 0.84[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs10061088 | 0.80[AMR][1000 genomes] |
| rs10064633 | 0.87[AFR][1000 genomes] |
| rs10067721 | 0.81[AFR][1000 genomes] |
| rs10069273 | 0.90[AMR][1000 genomes] |
| rs10069346 | 0.84[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs10071844 | 0.84[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs10071847 | 0.84[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs10077049 | 0.90[AMR][1000 genomes] |
| rs10077176 | 0.84[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs10079960 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12332369 | 0.87[AFR][1000 genomes] |
| rs13357738 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2131989 | 0.82[AFR][1000 genomes] |
| rs28619956 | 0.90[AMR][1000 genomes] |
| rs6451210 | 0.90[AMR][1000 genomes] |
| rs6862961 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6870518 | 0.81[AFR][1000 genomes] |
| rs6891096 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs6893143 | 0.84[AFR][1000 genomes] |
| rs6895275 | 0.87[AFR][1000 genomes] |
| rs73082282 | 1.00[EUR][1000 genomes] |
| rs73084316 | 1.00[EUR][1000 genomes] |
| rs73084342 | 1.00[EUR][1000 genomes] |
| rs7703587 | 0.90[AMR][1000 genomes] |
| rs7714298 | 0.84[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs7714839 | 0.84[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs7715524 | 0.87[AFR][1000 genomes] |
| rs7734377 | 0.84[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs9292602 | 0.87[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv525477 | chr5:35530905-35792990 | Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv881146 | chr5:35659239-35714851 | Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv515831 | chr5:35706279-35723861 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | esv1838423 | chr5:35712580-35713777 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:35693800-35714000 | Weak transcription | Brain Anterior Caudate | brain |
| 2 | chr5:35697000-35717000 | Weak transcription | Left Ventricle | heart |
| 3 | chr5:35699400-35720600 | Weak transcription | Monocytes-CD14+_RO01746 | blood |
