Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10051352	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10054231	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10058394	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10061088	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10064115	0.90[AMR][1000 genomes]
rs10069273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10069346	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10071844	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10071847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10077049	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10077176	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10079960	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13357738	0.90[AMR][1000 genomes]
rs28619956	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6862961	0.90[AMR][1000 genomes]
rs73084316	0.89[AMR][1000 genomes]
rs73084342	0.89[AMR][1000 genomes]
rs7703587	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7714298	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7714839	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7734377	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv515831	chr5:35706279-35723861	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35699400-35720600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr5:35718000-35718600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:35718200-35719200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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