Variant report

Variant	rs10068174
Chromosome Location	chr5:35772464-35772465
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SMARCC1	chr5:35771313-35772873	Hela-S3	cervix:	n/a	n/a
2	CEBPB	chr5:35770772-35773113	Hela-S3	cervix:	n/a	chr5:35772052-35772064 chr5:35771698-35771707 chr5:35771698-35771707 chr5:35772945-35772956 chr5:35771698-35771707 chr5:35771696-35771709
3	USF2	chr5:35772159-35772760	Hela-S3	cervix:	n/a	chr5:35772575-35772586

Variant related genes	Relation type
SPEF2	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10036879	1.00[AMR][1000 genomes]
rs10043797	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10044455	0.88[YRI][hapmap]
rs10045110	0.88[YRI][hapmap]
rs10051352	0.89[YRI][hapmap]
rs10057124	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10058394	0.88[YRI][hapmap]
rs10067721	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10069346	1.00[YRI][hapmap]
rs10069609	0.88[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10071757	1.00[AMR][1000 genomes]
rs10071847	0.88[YRI][hapmap]
rs12332369	1.00[YRI][hapmap]
rs12332521	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13357321	1.00[AMR][1000 genomes]
rs28562870	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6870518	0.88[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6878544	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6895275	0.88[YRI][hapmap]
rs7702273	0.84[AFR][1000 genomes]
rs7702529	1.00[AMR][1000 genomes]
rs7703587	0.88[YRI][hapmap]
rs7708334	0.80[YRI][hapmap]
rs7714298	1.00[YRI][hapmap]
rs7715524	1.00[YRI][hapmap]
rs7717371	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7720394	0.80[YRI][hapmap]
rs7728863	1.00[AMR][1000 genomes]
rs7735585	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9292602	0.86[YRI][hapmap]
rs9292610	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35770000-35772800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:35770600-35773000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr5:35770800-35772600	Enhancers	NHLF	lung
4	chr5:35771000-35781800	Weak transcription	Brain Anterior Caudate	brain
5	chr5:35771400-35773200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr5:35771600-35772600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:35771800-35772800	Enhancers	Primary T cells from cord blood	blood
8	chr5:35772000-35772800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr5:35772000-35774000	Weak transcription	HMEC	breast
10	chr5:35772200-35772600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr5:35772200-35772800	Enhancers	Fetal Thymus	thymus
12	chr5:35772200-35773800	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr5:35772200-35774000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr5:35772200-35774000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr5:35772200-35777000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr5:35772200-35777400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr5:35772400-35772800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
18	chr5:35772400-35772800	Enhancers	Thymus	Thymus
19	chr5:35772400-35772800	Enhancers	Osteobl	bone
20	chr5:35772400-35773800	Weak transcription	NHDF-Ad	bronchial
21	chr5:35772400-35775400	Enhancers	Hela-S3	cervix
22	chr5:35772400-35777000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr5:35772400-35780600	Weak transcription	HSMM	muscle

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