Variant report

Variant	rs10036879
Chromosome Location	chr5:35738235-35738236
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10043797	1.00[AMR][1000 genomes]
rs10051352	0.83[AFR][1000 genomes]
rs10054231	0.83[AFR][1000 genomes]
rs10057124	1.00[AMR][1000 genomes]
rs10058394	0.83[AFR][1000 genomes]
rs10067721	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10068174	1.00[AMR][1000 genomes]
rs10069346	0.83[AFR][1000 genomes]
rs10069609	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10071757	1.00[AMR][1000 genomes]
rs10071844	0.83[AFR][1000 genomes]
rs10071847	0.83[AFR][1000 genomes]
rs10077176	0.83[AFR][1000 genomes]
rs10079960	0.81[AFR][1000 genomes]
rs12332521	1.00[AMR][1000 genomes]
rs13357321	1.00[AMR][1000 genomes]
rs28562870	1.00[AMR][1000 genomes]
rs6870518	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6878544	1.00[AMR][1000 genomes]
rs6893143	0.83[AFR][1000 genomes]
rs7702273	0.83[AFR][1000 genomes]
rs7702529	1.00[AMR][1000 genomes]
rs7714298	0.83[AFR][1000 genomes]
rs7714839	0.83[AFR][1000 genomes]
rs7717371	1.00[AMR][1000 genomes]
rs7728863	1.00[AMR][1000 genomes]
rs7734377	0.83[AFR][1000 genomes]
rs7735585	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35737000-35741200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:35737200-35740600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:35737400-35743000	Weak transcription	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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