Variant report

Variant	rs10043797
Chromosome Location	chr5:35787602-35787603
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10036879	1.00[AMR][1000 genomes]
rs10044455	0.91[YRI][hapmap]
rs10045110	0.91[YRI][hapmap]
rs10051352	0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs10054231	0.81[AFR][1000 genomes]
rs10057124	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10058394	0.91[YRI][hapmap];0.81[AFR][1000 genomes]
rs10067721	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10068174	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10069346	0.91[YRI][hapmap];0.81[AFR][1000 genomes]
rs10069609	0.91[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10071757	1.00[AMR][1000 genomes]
rs10071844	0.81[AFR][1000 genomes]
rs10071847	0.91[YRI][hapmap];0.81[AFR][1000 genomes]
rs10077176	0.81[AFR][1000 genomes]
rs10080020	0.85[YRI][hapmap]
rs12332369	1.00[ASW][hapmap];0.81[LWK][hapmap];0.91[YRI][hapmap]
rs12332521	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13357321	1.00[AMR][1000 genomes]
rs2035995	0.85[YRI][hapmap]
rs2131989	0.83[YRI][hapmap]
rs28562870	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6870518	0.91[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6878544	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6893143	0.81[AFR][1000 genomes]
rs6895275	0.91[YRI][hapmap]
rs7702273	0.81[AFR][1000 genomes]
rs7702529	1.00[AMR][1000 genomes]
rs7703587	0.91[YRI][hapmap]
rs7708334	0.85[YRI][hapmap]
rs7714297	0.85[YRI][hapmap]
rs7714298	0.89[YRI][hapmap];0.81[AFR][1000 genomes]
rs7714839	0.81[AFR][1000 genomes]
rs7715524	0.81[LWK][hapmap];0.91[YRI][hapmap]
rs7717371	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7720394	0.85[YRI][hapmap]
rs7728863	1.00[AMR][1000 genomes]
rs7734377	0.81[AFR][1000 genomes]
rs7735585	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9292602	0.83[YRI][hapmap]
rs9292610	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35778000-35787800	Enhancers	Dnd41	blood
2	chr5:35781800-35788000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr5:35782000-35787800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr5:35782200-35789000	Weak transcription	NHDF-Ad	bronchial
5	chr5:35782400-35788000	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr5:35782400-35788800	Weak transcription	NHLF	lung
7	chr5:35782600-35789800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:35782800-35787800	Enhancers	Primary T cells from cord blood	blood
9	chr5:35783400-35789600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr5:35784200-35787800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr5:35784200-35789800	Weak transcription	HSMM	muscle
12	chr5:35785000-35787800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr5:35785000-35789000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr5:35785000-35803200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:35785400-35789600	Weak transcription	Osteobl	bone
16	chr5:35786400-35788800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr5:35786400-35790000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr5:35787000-35788000	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr5:35787000-35792200	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr5:35787400-35793200	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr5:35787600-35788600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr5:35787600-35788600	Weak transcription	Thymus	Thymus
23	chr5:35787600-35788800	Weak transcription	Fetal Thymus	thymus

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