Variant report

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:35274376..35277047-chr5:35315929..35318564,3	MCF-7	breast:
2	chr5:35227292..35232532-chr5:35268610..35275737,14	MCF-7	breast:
3	chr5:35275062..35277418-chr5:35280466..35282172,2	MCF-7	breast:
4	chr5:35273782..35276112-chr5:35309068..35310814,2	MCF-7	breast:
5	chr5:35267991..35269691-chr5:35272577..35276280,3	MCF-7	breast:
6	chr5:35275072..35277917-chr5:35279570..35281250,2	MCF-7	breast:
7	chr5:35273850..35275534-chr5:35293327..35295297,2	MCF-7	breast:
8	chr5:35273068..35277426-chr5:35305391..35308991,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000113494	Chromatin interaction

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10472257	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13154357	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs13185838	0.83[EUR][1000 genomes]
rs1604412	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1604413	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7701255	0.96[CEU][hapmap];0.84[GIH][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7708811	0.83[EUR][1000 genomes]
rs7713734	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv597811	chr5:35270560-35305669	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
2	nsv4791	chr5:35271967-35297546	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10063181	NUP155	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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