Variant report

Variant	rs13185838
Chromosome Location	chr5:35275536-35275537
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:35274376..35277047-chr5:35315929..35318564,3	MCF-7	breast:
2	chr5:35227292..35232532-chr5:35268610..35275737,14	MCF-7	breast:
3	chr5:35275062..35277418-chr5:35280466..35282172,2	MCF-7	breast:
4	chr5:35273782..35276112-chr5:35309068..35310814,2	MCF-7	breast:
5	chr5:35267991..35269691-chr5:35272577..35276280,3	MCF-7	breast:
6	chr5:35275072..35277917-chr5:35279570..35281250,2	MCF-7	breast:
7	chr5:35273068..35277426-chr5:35305391..35308991,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000113494	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10053574	0.96[ASN][1000 genomes]
rs10053745	0.96[ASN][1000 genomes]
rs10063181	0.83[EUR][1000 genomes]
rs10065675	0.93[ASN][1000 genomes]
rs10461952	0.80[EUR][1000 genomes]
rs10472257	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10472962	0.93[ASN][1000 genomes]
rs10472963	0.93[ASN][1000 genomes]
rs13154357	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13177403	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1587603	0.80[EUR][1000 genomes]
rs1604412	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1604413	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16873579	0.96[ASN][1000 genomes]
rs17317102	0.96[ASN][1000 genomes]
rs1864185	0.96[ASN][1000 genomes]
rs2047935	0.96[ASN][1000 genomes]
rs28605860	0.93[ASN][1000 genomes]
rs34503203	0.93[ASN][1000 genomes]
rs57214846	0.96[ASN][1000 genomes]
rs59625172	0.96[ASN][1000 genomes]
rs62357483	0.96[ASN][1000 genomes]
rs6451195	0.96[ASN][1000 genomes]
rs6451196	0.96[ASN][1000 genomes]
rs6451197	0.93[ASN][1000 genomes]
rs67598483	0.93[ASN][1000 genomes]
rs6863746	0.91[ASN][1000 genomes]
rs6869966	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6870392	0.96[ASN][1000 genomes]
rs6890966	0.90[ASN][1000 genomes]
rs6891313	0.96[ASN][1000 genomes]
rs6894763	0.93[ASN][1000 genomes]
rs6897727	0.96[ASN][1000 genomes]
rs6899186	0.96[ASN][1000 genomes]
rs7701255	0.84[EUR][1000 genomes]
rs7708811	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7713734	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7715575	0.96[ASN][1000 genomes]
rs7715855	0.96[ASN][1000 genomes]
rs7718383	0.96[ASN][1000 genomes]
rs7722459	0.96[ASN][1000 genomes]
rs7728464	0.93[ASN][1000 genomes]
rs7728551	0.93[ASN][1000 genomes]
rs883192	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv597811	chr5:35270560-35305669	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
2	nsv4791	chr5:35271967-35297546	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13185838	PRLR	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35275200-35275600	Enhancers	Liver	Liver

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