Variant report
| Variant | rs10065675 |
|---|---|
| Chromosome Location | chr5:35329543-35329544 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:41)
| rs_ID | r2[population] |
|---|---|
| rs10053574 | 0.96[ASN][1000 genomes] |
| rs10053745 | 0.96[ASN][1000 genomes] |
| rs10472962 | 1.00[ASN][1000 genomes] |
| rs10472963 | 1.00[ASN][1000 genomes] |
| rs13154357 | 0.90[ASN][1000 genomes] |
| rs13177403 | 0.84[ASN][1000 genomes] |
| rs13185838 | 0.93[ASN][1000 genomes] |
| rs16873579 | 0.96[ASN][1000 genomes] |
| rs17317102 | 0.96[ASN][1000 genomes] |
| rs1864185 | 0.96[ASN][1000 genomes] |
| rs2047935 | 0.96[ASN][1000 genomes] |
| rs28605860 | 0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34503203 | 0.89[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57214846 | 0.96[ASN][1000 genomes] |
| rs59625172 | 0.96[ASN][1000 genomes] |
| rs62357483 | 0.96[ASN][1000 genomes] |
| rs62357516 | 0.80[ASN][1000 genomes] |
| rs6451195 | 0.96[ASN][1000 genomes] |
| rs6451196 | 0.96[ASN][1000 genomes] |
| rs6451197 | 0.90[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67598483 | 0.93[ASN][1000 genomes] |
| rs6863746 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6869966 | 0.93[ASN][1000 genomes] |
| rs6870392 | 0.96[ASN][1000 genomes] |
| rs6890966 | 0.90[ASN][1000 genomes] |
| rs6891313 | 0.96[ASN][1000 genomes] |
| rs6894763 | 0.90[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6897727 | 0.96[ASN][1000 genomes] |
| rs6899186 | 0.96[ASN][1000 genomes] |
| rs7705425 | 0.85[ASN][1000 genomes] |
| rs7708811 | 0.93[ASN][1000 genomes] |
| rs7713734 | 0.91[ASN][1000 genomes] |
| rs7715575 | 0.96[ASN][1000 genomes] |
| rs7715855 | 0.96[ASN][1000 genomes] |
| rs7718145 | 0.81[ASN][1000 genomes] |
| rs7718257 | 0.81[ASN][1000 genomes] |
| rs7718383 | 0.96[ASN][1000 genomes] |
| rs7722459 | 0.96[ASN][1000 genomes] |
| rs7728464 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7728551 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7731227 | 0.81[ASN][1000 genomes] |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10065675 | PRLR | Cis_1M | lymphoblastoid | RTeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:35325200-35334200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
