Variant report

Variant	rs7728464
Chromosome Location	chr5:35333673-35333674
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10053574	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10053745	0.96[ASN][1000 genomes]
rs10065675	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10472257	0.90[CHB][hapmap]
rs10472962	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10472963	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13154357	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs13177403	0.84[ASN][1000 genomes]
rs13185838	0.93[ASN][1000 genomes]
rs16873579	0.96[ASN][1000 genomes]
rs17317102	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1864185	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2047935	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs28605860	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34503203	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57214846	0.96[ASN][1000 genomes]
rs59625172	0.96[ASN][1000 genomes]
rs62357483	0.96[ASN][1000 genomes]
rs62357516	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6451195	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6451196	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6451197	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs67598483	0.93[ASN][1000 genomes]
rs6863746	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6869966	0.93[ASN][1000 genomes]
rs6870392	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6890966	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6891313	0.96[ASN][1000 genomes]
rs6894763	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6897727	0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6899186	0.96[ASN][1000 genomes]
rs7701255	0.83[CHB][hapmap]
rs7705425	0.85[ASN][1000 genomes]
rs7708811	0.93[ASN][1000 genomes]
rs7713734	0.91[ASN][1000 genomes]
rs7715575	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7715855	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7718145	0.81[ASN][1000 genomes]
rs7718257	0.81[ASN][1000 genomes]
rs7718383	0.96[ASN][1000 genomes]
rs7722459	0.96[ASN][1000 genomes]
rs7727306	0.82[JPT][hapmap]
rs7728551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7731227	0.81[ASN][1000 genomes]
rs9292582	0.82[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7728464	CDK4	trans	parietal	SCAN
rs7728464	PRLR	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35325200-35334200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:35331800-35334200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:35332600-35335600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:35332800-35336000	Weak transcription	Fetal Intestine Small	intestine
5	chr5:35332800-35336800	Weak transcription	Fetal Intestine Large	intestine
6	chr5:35332800-35337000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr5:35332800-35337800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr5:35333000-35335200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr5:35333000-35336800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr5:35333200-35335200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr5:35333200-35335200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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