Variant report

Variant	rs6869966
Chromosome Location	chr5:35305153-35305154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:35304974..35307346-chr5:35309952..35312564,2	MCF-7	breast:
2	chr5:35303499..35305764-chr5:35307692..35309254,2	MCF-7	breast:
3	chr5:35304644..35307097-chr5:35333687..35335958,2	MCF-7	breast:
4	chr5:35301667..35303346-chr5:35305142..35308054,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10053574	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[ASN][1000 genomes]
rs10053745	0.96[ASN][1000 genomes]
rs10063181	0.81[CEU][hapmap]
rs10065675	0.93[ASN][1000 genomes]
rs10472257	0.83[CEU][hapmap];0.90[CHB][hapmap]
rs10472957	0.85[GIH][hapmap]
rs10472962	0.93[ASN][1000 genomes]
rs10472963	0.93[ASN][1000 genomes]
rs13154357	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13177403	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13185838	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16873579	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs17317102	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1864185	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[ASN][1000 genomes]
rs2047935	0.83[ASW][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs28605860	0.93[ASN][1000 genomes]
rs34503203	0.93[ASN][1000 genomes]
rs57214846	0.96[ASN][1000 genomes]
rs59625172	0.96[ASN][1000 genomes]
rs62357483	0.96[ASN][1000 genomes]
rs6451195	0.83[ASW][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.96[YRI][hapmap];0.96[ASN][1000 genomes]
rs6451196	0.83[ASW][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.96[YRI][hapmap];0.96[ASN][1000 genomes]
rs6451197	0.93[ASN][1000 genomes]
rs67598483	0.93[ASN][1000 genomes]
rs6863746	0.91[ASN][1000 genomes]
rs6870392	0.82[ASW][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6890966	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6891313	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6894763	0.93[ASN][1000 genomes]
rs6897727	0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6899186	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7701255	0.83[CHB][hapmap];0.88[MEX][hapmap]
rs7708811	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7713734	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7715575	0.82[ASW][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.96[YRI][hapmap];0.96[ASN][1000 genomes]
rs7715855	0.82[ASW][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.96[YRI][hapmap];0.96[ASN][1000 genomes]
rs7718383	0.96[ASN][1000 genomes]
rs7720773	0.85[GIH][hapmap]
rs7722459	0.96[ASN][1000 genomes]
rs7727306	0.82[JPT][hapmap]
rs7728464	0.93[ASN][1000 genomes]
rs7728551	0.93[ASN][1000 genomes]
rs9292582	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv597811	chr5:35270560-35305669	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6869966	PRLR	Cis_1M	lymphoblastoid	RTeQTL
rs6869966	NUP155	cis	parietal	SCAN
rs6869966	C5orf22	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35303600-35305200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:35303600-35308400	Weak transcription	GM12878-XiMat	blood
3	chr5:35303800-35308600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:35304600-35305200	Enhancers	Ovary	ovary
5	chr5:35305000-35307000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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