Variant report

Variant	rs34503203
Chromosome Location	chr5:35335006-35335007
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35330648..35332601-chr5:35334713..35336572,2	MCF-7	breast:
2	chr5:35304644..35307097-chr5:35333687..35335958,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10053574	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10053745	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10065675	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10472962	1.00[ASN][1000 genomes]
rs10472963	1.00[ASN][1000 genomes]
rs13154357	0.90[ASN][1000 genomes]
rs13177403	0.84[ASN][1000 genomes]
rs13185838	0.93[ASN][1000 genomes]
rs16873579	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17317102	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1864185	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2047935	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28605860	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28661483	0.84[EUR][1000 genomes]
rs34660804	0.84[EUR][1000 genomes]
rs57214846	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57522131	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59625172	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62357483	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62357516	0.80[ASN][1000 genomes]
rs6451195	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6451196	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6451197	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67598483	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6863746	0.98[ASN][1000 genomes]
rs6869966	0.93[ASN][1000 genomes]
rs6870392	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6890966	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6891313	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6894763	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6897727	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6899186	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71615850	0.84[EUR][1000 genomes]
rs7704665	0.81[EUR][1000 genomes]
rs7705425	0.85[ASN][1000 genomes]
rs7708811	0.93[ASN][1000 genomes]
rs7713734	0.91[ASN][1000 genomes]
rs7715575	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7715855	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7718145	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7718257	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7718383	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7722459	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7728464	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7728551	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7731227	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs949489	0.84[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34503203	PRLR	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35332600-35335600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:35332800-35336000	Weak transcription	Fetal Intestine Small	intestine
3	chr5:35332800-35336800	Weak transcription	Fetal Intestine Large	intestine
4	chr5:35332800-35337000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr5:35332800-35337800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr5:35333000-35335200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr5:35333000-35336800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr5:35333200-35335200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr5:35333200-35335200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr5:35335000-35337000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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