Variant report

Variant	rs7708811
Chromosome Location	chr5:35287426-35287427
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35281402..35283299-chr5:35285922..35287798,2	K562	blood:
2	chr5:35279160..35280732-chr5:35284868..35287781,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10053574	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.96[ASN][1000 genomes]
rs10053745	0.96[ASN][1000 genomes]
rs10063181	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs10065675	0.93[ASN][1000 genomes]
rs10461952	0.80[EUR][1000 genomes]
rs10472257	0.87[CEU][hapmap];0.90[CHB][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10472957	0.89[GIH][hapmap]
rs10472962	0.93[ASN][1000 genomes]
rs10472963	0.93[ASN][1000 genomes]
rs13154357	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13177403	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13185838	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1587603	0.80[EUR][1000 genomes]
rs1604412	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1604413	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16873579	0.96[ASN][1000 genomes]
rs17317102	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1864185	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[ASN][1000 genomes]
rs2047935	1.00[CHB][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[ASN][1000 genomes]
rs28605860	0.93[ASN][1000 genomes]
rs34503203	0.93[ASN][1000 genomes]
rs57214846	0.96[ASN][1000 genomes]
rs59625172	0.96[ASN][1000 genomes]
rs62357483	0.96[ASN][1000 genomes]
rs6451195	1.00[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[ASN][1000 genomes]
rs6451196	1.00[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[ASN][1000 genomes]
rs6451197	0.93[ASN][1000 genomes]
rs67598483	0.93[ASN][1000 genomes]
rs6863746	0.91[ASN][1000 genomes]
rs6869966	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6870392	1.00[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[ASN][1000 genomes]
rs6890966	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.90[ASN][1000 genomes]
rs6891313	0.96[ASN][1000 genomes]
rs6894763	0.93[ASN][1000 genomes]
rs6897727	0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6899186	0.96[ASN][1000 genomes]
rs7701255	0.81[CEU][hapmap];0.83[CHB][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap];0.84[EUR][1000 genomes]
rs7713734	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7715575	1.00[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[ASN][1000 genomes]
rs7715855	1.00[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[ASN][1000 genomes]
rs7718383	0.96[ASN][1000 genomes]
rs7720773	0.89[GIH][hapmap]
rs7722459	0.96[ASN][1000 genomes]
rs7727306	0.82[JPT][hapmap]
rs7728464	0.93[ASN][1000 genomes]
rs7728551	0.93[ASN][1000 genomes]
rs883192	0.80[EUR][1000 genomes]
rs9292582	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv597811	chr5:35270560-35305669	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
2	nsv4791	chr5:35271967-35297546	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7708811	NUP155	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35286600-35287600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:35286800-35288000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr5:35286800-35288000	Enhancers	Monocytes-CD14+_RO01746	blood

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