Variant report

Variant	rs1604413
Chromosome Location	chr5:35286554-35286555
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10053574	0.82[CHB][hapmap]
rs10063181	1.00[CEU][hapmap];0.91[GIH][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10472257	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13154357	0.84[CEU][hapmap];0.91[CHB][hapmap];0.84[EUR][1000 genomes]
rs13185838	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1604412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17317102	0.91[CHB][hapmap]
rs1864185	0.91[CHB][hapmap]
rs2047935	0.91[CHB][hapmap]
rs6451195	0.91[CHB][hapmap]
rs6451196	0.91[CHB][hapmap]
rs6870392	0.91[CHB][hapmap]
rs6890966	0.91[CHB][hapmap]
rs7701255	0.94[ASW][hapmap];0.96[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7708811	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7713734	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7715575	0.91[CHB][hapmap]
rs7715855	0.91[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv597811	chr5:35270560-35305669	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
2	nsv4791	chr5:35271967-35297546	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1604413	NUP155	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35282200-35286800	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr5:35282400-35286800	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr5:35285400-35286600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links