Variant report

Variant	rs7701255
Chromosome Location	chr5:35270560-35270561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10063181	0.96[CEU][hapmap];0.84[GIH][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10472257	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13154357	0.81[CEU][hapmap];0.83[CHB][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13185838	0.84[EUR][1000 genomes]
rs1604412	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1604413	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17317102	0.83[CHB][hapmap]
rs1864185	0.83[CHB][hapmap]
rs2047935	0.83[CHB][hapmap]
rs6451195	0.83[CHB][hapmap]
rs6451196	0.83[CHB][hapmap]
rs6870392	0.83[CHB][hapmap]
rs6890966	0.83[CHB][hapmap]
rs7708811	0.84[EUR][1000 genomes]
rs7713734	0.84[EUR][1000 genomes]
rs7715575	0.83[CHB][hapmap]
rs7715855	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv597811	chr5:35270560-35305669	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7701255	NUP155	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links