Variant report
| Variant | rs10472257 |
|---|---|
| Chromosome Location | chr5:35273226-35273227 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:6 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:35227292..35232532-chr5:35268610..35275737,14 | MCF-7 | breast: | |
| 2 | chr5:35269820..35271548-chr5:35271656..35274185,2 | MCF-7 | breast: | |
| 3 | chr5:35267991..35269691-chr5:35272577..35276280,3 | MCF-7 | breast: | |
| 4 | chr5:35271294..35274263-chr5:35275782..35279580,3 | MCF-7 | breast: | |
| 5 | chr5:35230384..35232037-chr5:35270698..35273442,2 | MCF-7 | breast: | |
| 6 | chr5:35273068..35277426-chr5:35305391..35308991,5 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000113494 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10053574 | 0.81[CHB][hapmap] |
| rs10063181 | 1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs13154357 | 0.88[CEU][hapmap];0.90[CHB][hapmap];0.83[EUR][1000 genomes] |
| rs13185838 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs1604412 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1604413 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17317102 | 0.90[CHB][hapmap] |
| rs1864185 | 0.90[CHB][hapmap] |
| rs2047935 | 0.90[CHB][hapmap] |
| rs6451195 | 0.90[CHB][hapmap] |
| rs6451196 | 0.90[CHB][hapmap] |
| rs6870392 | 0.90[CHB][hapmap] |
| rs6890966 | 0.90[CHB][hapmap] |
| rs7701255 | 0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7708811 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs7713734 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs7715575 | 0.90[CHB][hapmap] |
| rs7715855 | 0.90[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv597811 | chr5:35270560-35305669 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | n/a |
| 2 | nsv4791 | chr5:35271967-35297546 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
