Variant report

Variant	rs6897727
Chromosome Location	chr5:35306687-35306688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:35306548..35307429-chr5:35476806..35477517,2	MCF-7	breast:
2	chr5:35230520..35231055-chr5:35306448..35307417,2	MCF-7	breast:
3	chr5:35306537..35308701-chr5:35323913..35326409,2	MCF-7	breast:
4	chr5:35304974..35307346-chr5:35309952..35312564,2	MCF-7	breast:
5	chr15:69093279..69095478-chr5:35305385..35307435,2	MCF-7	breast:
6	chr5:35304644..35307097-chr5:35333687..35335958,2	MCF-7	breast:
7	chr5:35227956..35231648-chr5:35306596..35309604,5	MCF-7	breast:
8	chr5:35301667..35303346-chr5:35305142..35308054,2	MCF-7	breast:
9	chr5:35227369..35231547-chr5:35305880..35313483,7	MCF-7	breast:
10	chr5:35273068..35277426-chr5:35305391..35308991,5	MCF-7	breast:
11	chr5:35292717..35295052-chr5:35306592..35308277,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000113494	Chromatin interaction
ENSG00000265195	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10053574	1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10053745	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10065675	0.96[ASN][1000 genomes]
rs10472962	0.96[ASN][1000 genomes]
rs10472963	0.96[ASN][1000 genomes]
rs13154357	0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs13177403	0.88[ASN][1000 genomes]
rs13185838	0.96[ASN][1000 genomes]
rs13355199	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16873579	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17317102	0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1864185	0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2047935	0.88[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28605860	0.96[ASN][1000 genomes]
rs28661483	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34503203	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34660804	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57214846	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57522131	0.84[EUR][1000 genomes]
rs59625172	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62357483	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6451195	0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6451196	0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6451197	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67598483	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6863746	0.95[ASN][1000 genomes]
rs6869966	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6870392	0.88[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6890966	0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6891313	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6894763	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6899186	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71615850	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7704665	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7705425	0.82[ASN][1000 genomes]
rs7708811	0.96[ASN][1000 genomes]
rs7713734	0.95[ASN][1000 genomes]
rs7715575	0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7715855	0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7718145	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7718257	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7718383	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7722459	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7728464	0.96[ASN][1000 genomes]
rs7728551	0.96[ASN][1000 genomes]
rs7731227	0.84[EUR][1000 genomes]
rs949489	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6897727	PRLR	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35303600-35308400	Weak transcription	GM12878-XiMat	blood
2	chr5:35303800-35308600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:35305000-35307000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:35305200-35308600	Weak transcription	Ovary	ovary
5	chr5:35306000-35308600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:35306600-35307000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr5:35306600-35307000	Enhancers	Pancreas	Pancrea

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