Variant report
| Variant | rs13177403 |
|---|---|
| Chromosome Location | chr5:35291844-35291845 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:35229175..35231081-chr5:35289949..35292559,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000113494 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10053574 | 0.88[ASN][1000 genomes] |
| rs10053745 | 0.88[ASN][1000 genomes] |
| rs10065675 | 0.84[ASN][1000 genomes] |
| rs10472962 | 0.84[ASN][1000 genomes] |
| rs10472963 | 0.84[ASN][1000 genomes] |
| rs13154357 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs13185838 | 0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs16873579 | 0.88[ASN][1000 genomes] |
| rs17317102 | 0.88[ASN][1000 genomes] |
| rs1864185 | 0.88[ASN][1000 genomes] |
| rs2047935 | 0.88[ASN][1000 genomes] |
| rs28605860 | 0.84[ASN][1000 genomes] |
| rs34503203 | 0.84[ASN][1000 genomes] |
| rs57214846 | 0.88[ASN][1000 genomes] |
| rs59625172 | 0.88[ASN][1000 genomes] |
| rs62357483 | 0.88[ASN][1000 genomes] |
| rs6451195 | 0.88[ASN][1000 genomes] |
| rs6451196 | 0.88[ASN][1000 genomes] |
| rs6451197 | 0.84[ASN][1000 genomes] |
| rs67598483 | 0.85[ASN][1000 genomes] |
| rs6863746 | 0.82[ASN][1000 genomes] |
| rs6869966 | 0.85[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6870392 | 0.88[ASN][1000 genomes] |
| rs6890966 | 0.82[ASN][1000 genomes] |
| rs6891313 | 0.88[ASN][1000 genomes] |
| rs6894763 | 0.84[ASN][1000 genomes] |
| rs6897727 | 0.88[ASN][1000 genomes] |
| rs6899186 | 0.88[ASN][1000 genomes] |
| rs7708811 | 0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7713734 | 0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7715575 | 0.88[ASN][1000 genomes] |
| rs7715855 | 0.88[ASN][1000 genomes] |
| rs7718383 | 0.88[ASN][1000 genomes] |
| rs7722459 | 0.88[ASN][1000 genomes] |
| rs7728464 | 0.84[ASN][1000 genomes] |
| rs7728551 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv597811 | chr5:35270560-35305669 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | n/a |
| 2 | nsv4791 | chr5:35271967-35297546 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs13177403 | PRLR | Cis_1M | lymphoblastoid | RTeQTL |
Chromatin state (count:0 , 50 per page) page:
| No data |
