Variant report

Variant	rs10064207
Chromosome Location	chr5:68245338-68245339
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10056163	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10063661	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10068972	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10071585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10075860	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10940186	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11750612	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12515924	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58355514	0.90[EUR][1000 genomes]
rs62354488	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62354490	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6414814	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6414815	0.92[EUR][1000 genomes]
rs7733467	0.90[EUR][1000 genomes]
rs9291937	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9800367	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830332	chr5:68238288-68282681	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68242200-68250800	Enhancers	Fetal Lung	lung
2	chr5:68243400-68245400	Weak transcription	Fetal Heart	heart
3	chr5:68244400-68246400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr5:68245000-68246200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:68245000-68246400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr5:68245000-68247000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:68245000-68247000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr5:68245000-68247000	Enhancers	Left Ventricle	heart
9	chr5:68245000-68247000	Enhancers	Ovary	ovary
10	chr5:68245000-68247000	Enhancers	Right Atrium	heart
11	chr5:68245200-68246200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr5:68245200-68247200	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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