Variant report

Variant	rs10071585
Chromosome Location	chr5:68245920-68245921
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10056163	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10063661	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10064207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10068972	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10075860	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10078240	0.80[CEU][hapmap]
rs10940186	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10940194	0.82[CEU][hapmap]
rs11750612	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12515924	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs164802	0.80[CEU][hapmap]
rs4976074	0.80[CEU][hapmap];0.86[GIH][hapmap]
rs4976075	0.85[GIH][hapmap]
rs58355514	0.90[EUR][1000 genomes]
rs62354488	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62354490	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6414814	1.00[CEU][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6414815	0.92[EUR][1000 genomes]
rs7733467	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs9291937	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9800367	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830332	chr5:68238288-68282681	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68242200-68250800	Enhancers	Fetal Lung	lung
2	chr5:68244400-68246400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr5:68245000-68246200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:68245000-68246400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr5:68245000-68247000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:68245000-68247000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr5:68245000-68247000	Enhancers	Left Ventricle	heart
8	chr5:68245000-68247000	Enhancers	Ovary	ovary
9	chr5:68245000-68247000	Enhancers	Right Atrium	heart
10	chr5:68245200-68246200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr5:68245200-68247200	Enhancers	Adipose Nuclei	Adipose
12	chr5:68245400-68246200	Enhancers	Placenta	Placenta
13	chr5:68245400-68246400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:68245400-68246400	Enhancers	Fetal Muscle Trunk	muscle
15	chr5:68245400-68246800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr5:68245400-68246800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr5:68245400-68246800	Enhancers	Right Ventricle	heart
18	chr5:68245400-68247200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr5:68245400-68247200	Enhancers	Fetal Heart	heart
20	chr5:68245600-68246000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr5:68245600-68246000	Enhancers	Brain Anterior Caudate	brain
22	chr5:68245600-68246000	Enhancers	Brain Cingulate Gyrus	brain
23	chr5:68245600-68246000	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr5:68245600-68246000	Enhancers	NHEK	skin
25	chr5:68245600-68246200	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr5:68245600-68246200	Enhancers	Esophagus	oesophagus
27	chr5:68245600-68246200	Enhancers	Pancreas	Pancrea
28	chr5:68245600-68246800	Enhancers	Placenta Amnion	Placenta Amnion
29	chr5:68245600-68247000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr5:68245600-68247400	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr5:68245800-68246000	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr5:68245800-68246000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
33	chr5:68245800-68246400	Flanking Active TSS	HMEC	breast
34	chr5:68245800-68246600	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr5:68245800-68247000	Enhancers	Brain Hippocampus Middle	brain

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