Variant report

Variant	rs62354490
Chromosome Location	chr5:68265014-68265015
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10056163	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10063661	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10064207	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10068972	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10071585	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10075860	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10940186	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11750612	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12515924	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12516903	0.86[AMR][1000 genomes]
rs58355514	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62354488	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6414814	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6414815	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6888622	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7733467	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9291937	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9800367	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830332	chr5:68238288-68282681	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68263800-68271400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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