Variant report

Variant	rs10075860
Chromosome Location	chr5:68248133-68248134
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10056163	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10063661	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10064207	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10068972	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10071585	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10940186	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11750612	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12515924	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58355514	0.90[EUR][1000 genomes]
rs62354488	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62354490	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6414814	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6414815	0.91[EUR][1000 genomes]
rs7733467	0.91[EUR][1000 genomes]
rs9291937	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9800367	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830332	chr5:68238288-68282681	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68242200-68250800	Enhancers	Fetal Lung	lung
2	chr5:68246000-68248200	Enhancers	Fetal Muscle Leg	muscle
3	chr5:68246200-68262200	Weak transcription	Esophagus	oesophagus
4	chr5:68246600-68250200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr5:68246800-68249200	Weak transcription	Brain Anterior Caudate	brain
6	chr5:68246800-68250200	Weak transcription	Right Ventricle	heart
7	chr5:68247000-68248800	Weak transcription	Left Ventricle	heart
8	chr5:68247000-68250200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr5:68247200-68248800	Weak transcription	Adipose Nuclei	Adipose
10	chr5:68247200-68248800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr5:68247200-68249000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:68247200-68249600	Weak transcription	Fetal Heart	heart
13	chr5:68247400-68248800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr5:68247800-68249400	Enhancers	Right Atrium	heart
15	chr5:68248000-68248200	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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