Variant report
| Variant | rs6414815 |
|---|---|
| Chromosome Location | chr5:68263798-68263799 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:68258016..68260416-chr5:68261824..68264961,3 | MCF-7 | breast: |
(count:2 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CCDC125-4 | chr5:68263568-68264283 | XLOC_004860 |
| 2 | lnc-CCDC125-4 | chr5:68263568-68264283 | NONHSAT101876 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000250066 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10056163 | 0.91[EUR][1000 genomes] |
| rs10063661 | 0.92[EUR][1000 genomes] |
| rs10064207 | 0.92[EUR][1000 genomes] |
| rs10068972 | 0.94[EUR][1000 genomes] |
| rs10071585 | 0.92[EUR][1000 genomes] |
| rs10075860 | 0.91[EUR][1000 genomes] |
| rs10940186 | 0.92[EUR][1000 genomes] |
| rs11750612 | 0.96[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12515924 | 0.95[EUR][1000 genomes] |
| rs58355514 | 0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs62354488 | 0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs62354490 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6414814 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7733467 | 0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9291937 | 0.91[EUR][1000 genomes] |
| rs9800367 | 0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830332 | chr5:68238288-68282681 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | esv3421637 | chr5:68258596-68263994 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
