Variant report

Variant	rs6414814
Chromosome Location	chr5:68263602-68263603
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:68258016..68260416-chr5:68261824..68264961,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCDC125-4	chr5:68263568-68264283	XLOC_004860
2	lnc-SLC30A5-1	chr5:68263494-68263672	XLOC_004417
3	lnc-CCDC125-4	chr5:68263568-68264283	NONHSAT101876

Variant related genes	Relation type
ENSG00000250066	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10056163	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10063661	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10064207	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10068972	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10071585	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10075860	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10078240	0.80[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.86[GIH][hapmap]
rs10471766	0.85[CHB][hapmap]
rs10940186	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10940194	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs11750612	1.00[CEU][hapmap];0.84[CHB][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12515924	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12516903	0.86[AMR][1000 genomes]
rs164802	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs2076823	0.84[CHB][hapmap]
rs3923114	1.00[CHB][hapmap]
rs4976074	0.80[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap]
rs4976075	1.00[CHB][hapmap];0.83[CHD][hapmap];0.93[GIH][hapmap]
rs4976178	0.86[CHB][hapmap];0.83[CHD][hapmap]
rs58355514	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62354488	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62354490	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6414815	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6888622	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7444785	1.00[CHB][hapmap]
rs7733467	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9291937	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9800367	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830332	chr5:68238288-68282681	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3421637	chr5:68258596-68263994	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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