Variant report

Variant	rs10078240
Chromosome Location	chr5:68326569-68326570
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF1	chr5:68326545-68326822	K562	blood:	n/a	n/a
2	EP300	chr5:68325287-68327472	SK-N-SH	brain:	n/a	chr5:68325327-68325341 chr5:68325331-68325340
3	GATA3	chr5:68326333-68326982	SH-SY5Y	brain:	n/a	n/a
4	RFX5	chr5:68325442-68327442	SK-N-SH	brain:	n/a	n/a
5	POLR2A	chr5:68326453-68326897	H1-neurons	neurons:	n/a	n/a
6	CEBPB	chr5:68326533-68326837	Hela-S3	cervix:	n/a	n/a
7	GATA3	chr5:68326408-68326885	SK-N-SH	brain:	n/a	n/a
8	JUND	chr5:68326468-68326887	K562	blood:	n/a	chr5:68326650-68326659
9	JUN	chr5:68326178-68327018	K562	blood:	n/a	chr5:68326650-68326659 chr5:68326646-68326659
10	JUN	chr5:68326511-68326815	HepG2	liver:	n/a	chr5:68326650-68326659 chr5:68326646-68326659
11	GATA3	chr5:68326429-68326951	SK-N-SH	brain:	n/a	n/a
12	TCF12	chr5:68326516-68326857	SK-N-SH	brain:	n/a	n/a
13	POLR2A	chr5:68326442-68326992	H1-neurons	neurons:	n/a	n/a
14	KAP1	chr5:68326565-68326965	HEK293	kidney:	n/a	n/a
15	MXI1	chr5:68325964-68327355	SK-N-SH	brain:	n/a	n/a
16	REST	chr5:68326553-68326853	SK-N-SH	brain:	n/a	n/a
17	REST	chr5:68326432-68327037	H1-neurons	neurons:	n/a	n/a
18	MYC	chr5:68326533-68326904	K562	blood:	n/a	n/a
19	REST	chr5:68326179-68327149	H1-neurons	neurons:	n/a	n/a
20	GATA2	chr5:68326460-68326948	SH-SY5Y	brain:	n/a	n/a
21	JUND	chr5:68326232-68327046	SK-N-SH	brain:	n/a	chr5:68326650-68326659
22	EP300	chr5:68326519-68326825	Hela-S3	cervix:	n/a	n/a
23	JUND	chr5:68326472-68326833	HepG2	liver:	n/a	chr5:68326650-68326659
24	NR3C1	chr5:68326564-68326814	ECC-1	luminal epithelium:	n/a	chr5:68326687-68326701 chr5:68326687-68326701 chr5:68326687-68326701

Variant related genes	Relation type
ENSG00000249352	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10036073	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10471766	0.83[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10940194	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11742568	0.82[ASN][1000 genomes]
rs11750612	0.84[CHB][hapmap]
rs12516903	0.85[ASN][1000 genomes]
rs164795	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs164796	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs164798	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs164801	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs164802	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs186832	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2076823	0.84[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2434352	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2450236	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2450237	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs338676	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs338677	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3923114	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4246762	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4246763	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4295341	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4315885	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4410610	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4976063	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4976074	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4976075	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.90[LWK][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4976076	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4976178	0.86[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs56238212	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60544415	0.82[ASN][1000 genomes]
rs62354528	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6414814	0.80[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.86[GIH][hapmap]
rs6450003	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6450015	0.81[ASN][1000 genomes]
rs6450016	0.81[ASN][1000 genomes]
rs7444785	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7733467	1.00[CHB][hapmap]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68320400-68327000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:68325000-68327000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr5:68325400-68326800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:68325800-68326800	Enhancers	Brain Substantia Nigra	brain
5	chr5:68326000-68326800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:68326000-68326800	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr5:68326200-68327200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:68326400-68326800	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:68326400-68326800	Enhancers	Brain Anterior Caudate	brain

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