Variant report

Variant	rs12516903
Chromosome Location	chr5:68307546-68307547
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:68303714..68306430-chr5:68307322..68309194,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10036073	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10068972	0.81[AMR][1000 genomes]
rs10078240	0.84[CEU][hapmap];1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs10471766	0.85[CHB][hapmap];0.80[ASN][1000 genomes]
rs10940194	0.84[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11750612	0.83[CEU][hapmap];0.84[CHB][hapmap];0.85[AMR][1000 genomes]
rs12515924	0.81[AMR][1000 genomes]
rs164795	0.84[ASN][1000 genomes]
rs164796	0.84[ASN][1000 genomes]
rs164798	0.84[ASN][1000 genomes]
rs164801	0.85[ASN][1000 genomes]
rs164802	0.85[CEU][hapmap];1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs186832	0.84[ASN][1000 genomes]
rs2076823	0.85[CHB][hapmap];0.80[ASN][1000 genomes]
rs2434352	0.84[ASN][1000 genomes]
rs2450236	0.84[ASN][1000 genomes]
rs2450237	0.84[ASN][1000 genomes]
rs338676	0.84[ASN][1000 genomes]
rs338677	0.84[ASN][1000 genomes]
rs3923114	0.92[CEU][hapmap];1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs4246762	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4246763	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4295341	0.85[ASN][1000 genomes]
rs4315885	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4410610	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4976063	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4976074	0.84[CEU][hapmap];0.86[CHB][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4976075	0.84[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4976076	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4976178	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs56238212	0.85[ASN][1000 genomes]
rs62354490	0.86[AMR][1000 genomes]
rs62354528	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6414814	1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes]
rs6450003	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6888622	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7444785	0.85[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7733467	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs9800367	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598413	chr5:68306058-68320702	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68307000-68308000	Enhancers	Pancreas	Pancrea
2	chr5:68307400-68307600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin

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