Variant report

Variant	rs2076823
Chromosome Location	chr5:68341654-68341655
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr5:68341492-68341746	K562	blood:	n/a	n/a
2	CHD2	chr5:68341546-68341674	K562	blood:	n/a	n/a
3	MAX	chr5:68341621-68341679	NB4	blood:	n/a	n/a
4	CEBPB	chr5:68341646-68341730	K562	blood:	n/a	n/a
5	EP300	chr5:68340906-68341811	K562	blood:	n/a	n/a
6	BACH1	chr5:68341622-68341743	K562	blood:	n/a	n/a
7	JUND	chr5:68340948-68341780	K562	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:68340722..68342440-chr5:68663924..68666429,2	K562	blood:
2	chr5:68339937..68342368-chr5:68462936..68465117,2	K562	blood:
3	chr5:68321118..68323616-chr5:68341647..68343951,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000250237	TF binding region
ENSG00000152942	Chromatin interaction
ENSG00000085231	Chromatin interaction
ENSG00000134057	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10036073	0.92[ASN][1000 genomes]
rs10078240	0.84[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10471766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10940194	0.81[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs11742568	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11744305	0.82[EUR][1000 genomes]
rs11750612	0.82[CHB][hapmap]
rs12108990	0.81[EUR][1000 genomes]
rs12516903	0.80[ASN][1000 genomes]
rs12651824	0.94[EUR][1000 genomes]
rs164795	0.95[ASN][1000 genomes]
rs164796	0.95[ASN][1000 genomes]
rs164798	0.95[ASN][1000 genomes]
rs164801	0.93[ASN][1000 genomes]
rs164802	0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs186832	0.95[ASN][1000 genomes]
rs2130758	0.82[EUR][1000 genomes]
rs2327640	0.81[EUR][1000 genomes]
rs2434352	0.95[ASN][1000 genomes]
rs2450236	0.95[ASN][1000 genomes]
rs2450237	0.95[ASN][1000 genomes]
rs338676	0.95[ASN][1000 genomes]
rs338677	0.95[ASN][1000 genomes]
rs3923114	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs4246762	0.92[ASN][1000 genomes]
rs4246763	0.92[ASN][1000 genomes]
rs4295341	0.93[ASN][1000 genomes]
rs4315885	0.92[ASN][1000 genomes]
rs4410610	0.92[ASN][1000 genomes]
rs4976063	0.92[ASN][1000 genomes]
rs4976074	0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs4976075	0.84[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs4976076	0.92[ASN][1000 genomes]
rs4976178	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56198247	0.81[EUR][1000 genomes]
rs56205286	0.81[EUR][1000 genomes]
rs56238212	0.93[ASN][1000 genomes]
rs60544415	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62354528	0.92[ASN][1000 genomes]
rs62372624	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6414814	0.84[CHB][hapmap]
rs6450003	0.93[ASN][1000 genomes]
rs6450015	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6450016	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6450018	0.81[EUR][1000 genomes]
rs6874442	0.81[EUR][1000 genomes]
rs6879036	0.82[EUR][1000 genomes]
rs6893702	0.82[EUR][1000 genomes]
rs7444785	0.85[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs7733467	0.85[CHB][hapmap]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68338400-68342200	Enhancers	K562	blood
2	chr5:68339200-68342200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:68339200-68342200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:68339200-68342200	Weak transcription	Hela-S3	cervix
5	chr5:68339400-68342200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr5:68339400-68345600	Weak transcription	HSMMtube	muscle
7	chr5:68339600-68342200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:68339600-68342200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr5:68339800-68342200	Weak transcription	A549	lung
10	chr5:68339800-68344800	Weak transcription	HepG2	liver
11	chr5:68340000-68342200	Weak transcription	Liver	Liver
12	chr5:68340000-68345600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr5:68341600-68342600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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