Variant report

Variant	rs6450018
Chromosome Location	chr5:68372674-68372675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10078240	0.86[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap]
rs10471766	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.82[EUR][1000 genomes]
rs10940194	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs11742568	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11744305	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11750612	0.84[CHB][hapmap]
rs12108990	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12651824	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs164802	0.85[CHB][hapmap];0.93[JPT][hapmap]
rs2076823	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs2130758	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2327640	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3923114	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4976074	0.88[CHD][hapmap];0.88[JPT][hapmap]
rs4976075	0.86[CHB][hapmap];0.83[CHD][hapmap];0.88[JPT][hapmap]
rs4976178	0.80[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs56198247	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56205286	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60544415	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6414814	0.86[CHB][hapmap]
rs6450015	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6450016	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6874442	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6879036	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6893702	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7444785	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs7733467	0.86[CHB][hapmap]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68372200-68375000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr5:68372200-68375400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr5:68372200-68379200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr5:68372400-68374200	Weak transcription	Stomach Mucosa	stomach
5	chr5:68372400-68374400	Weak transcription	Fetal Intestine Large	intestine
6	chr5:68372400-68374400	Weak transcription	Fetal Intestine Small	intestine
7	chr5:68372400-68374600	Weak transcription	Duodenum Mucosa	Duodenum

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