Variant report

Variant	rs2130758
Chromosome Location	chr5:68366143-68366144
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10078240	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs10471766	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.83[EUR][1000 genomes]
rs10940194	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs11742568	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11744305	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11750612	0.84[CHB][hapmap]
rs12108990	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12651824	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs164802	0.85[CHB][hapmap];0.93[JPT][hapmap]
rs2076823	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs2327640	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3923114	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs4976074	0.88[JPT][hapmap]
rs4976075	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs4976178	0.80[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes]
rs56198247	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56205286	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60544415	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6414814	0.86[CHB][hapmap]
rs6450015	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6450016	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6450018	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6874442	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6879036	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6893702	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7444785	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs7733467	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv968920	chr5:68350235-68371417	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68360200-68370200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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