Variant report

Variant	rs10471766
Chromosome Location	chr5:68344449-68344450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr5:68343940-68344487	HCT-116	colon:	n/a	chr5:68344207-68344214 chr5:68344197-68344216
2	CTCF	chr5:68343829-68344564	A549	lung:	n/a	chr5:68344194-68344215 chr5:68344200-68344216 chr5:68344199-68344217 chr5:68344204-68344212
3	SMC3	chr5:68343807-68344526	SK-N-SH	brain:	n/a	chr5:68344201-68344215
4	RAD21	chr5:68343900-68344466	HCT-116	colon:	n/a	chr5:68344207-68344214 chr5:68344197-68344216
5	RAD21	chr5:68343887-68344456	MCF-7	breast:	n/a	chr5:68344207-68344214 chr5:68344197-68344216
6	RAD21	chr5:68343486-68344610	SK-N-SH	brain:	n/a	chr5:68344207-68344214 chr5:68344197-68344216
7	RAD21	chr5:68343951-68344456	A549	lung:	n/a	chr5:68344207-68344214 chr5:68344197-68344216

No.	Distal block	Cell Line	Cell type
1	chr5:68342981..68345897-chr5:68356534..68359095,2	K562	blood:
2	chr5:68342686..68345135-chr5:68627901..68629727,2	K562	blood:
3	chr5:68327990..68328493-chr5:68343712..68344547,2	MCF-7	breast:
4	chr5:68343635..68345717-chr5:68626604..68629727,3	K562	blood:

Variant related genes	Relation type
ENSG00000250237	TF binding region
ENSG00000183323	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10036073	0.92[ASN][1000 genomes]
rs10078240	0.83[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10940194	0.86[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs11742568	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11744305	0.83[EUR][1000 genomes]
rs11750612	0.82[CHB][hapmap]
rs12108990	0.81[EUR][1000 genomes]
rs12516903	0.80[ASN][1000 genomes]
rs12651824	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs164795	0.95[ASN][1000 genomes]
rs164796	0.95[ASN][1000 genomes]
rs164798	0.95[ASN][1000 genomes]
rs164801	0.93[ASN][1000 genomes]
rs164802	0.84[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs186832	0.95[ASN][1000 genomes]
rs2076823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2130758	0.83[EUR][1000 genomes]
rs2327640	0.82[EUR][1000 genomes]
rs2434352	0.95[ASN][1000 genomes]
rs2450236	0.95[ASN][1000 genomes]
rs2450237	0.95[ASN][1000 genomes]
rs338676	0.95[ASN][1000 genomes]
rs338677	0.95[ASN][1000 genomes]
rs3923114	0.83[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs4246762	0.92[ASN][1000 genomes]
rs4246763	0.92[ASN][1000 genomes]
rs4295341	0.93[ASN][1000 genomes]
rs4315885	0.92[ASN][1000 genomes]
rs4410610	0.92[ASN][1000 genomes]
rs4976063	0.92[ASN][1000 genomes]
rs4976074	0.83[CEU][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs4976075	0.82[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs4976076	0.92[ASN][1000 genomes]
rs4976178	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56198247	0.82[EUR][1000 genomes]
rs56205286	0.82[EUR][1000 genomes]
rs56238212	0.93[ASN][1000 genomes]
rs60544415	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62354528	0.92[ASN][1000 genomes]
rs62372624	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6414814	0.85[CHB][hapmap]
rs6450003	0.93[ASN][1000 genomes]
rs6450015	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6450016	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6450018	0.82[EUR][1000 genomes]
rs6874442	0.82[EUR][1000 genomes]
rs6879036	0.83[EUR][1000 genomes]
rs6893702	0.83[EUR][1000 genomes]
rs7444785	0.84[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs7733467	0.85[CHB][hapmap]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68339400-68345600	Weak transcription	HSMMtube	muscle
2	chr5:68339800-68344800	Weak transcription	HepG2	liver
3	chr5:68340000-68345600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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