Variant report

Variant	rs10066966
Chromosome Location	chr5:95633909-95633910
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10073073	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10463169	0.82[ASN][1000 genomes]
rs10476669	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10866766	0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11135448	0.82[ASN][1000 genomes]
rs11135449	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11135451	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11742368	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11742915	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11749674	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12519062	0.82[ASN][1000 genomes]
rs12652939	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12652970	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12653663	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12659174	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13173638	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13183250	0.82[ASN][1000 genomes]
rs13190432	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13358858	0.82[ASN][1000 genomes]
rs1423673	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1498928	0.80[CHB][hapmap]
rs1695218	0.90[EUR][1000 genomes]
rs271917	1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs271918	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs271940	0.90[EUR][1000 genomes]
rs2910933	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2936431	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3922469	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4077817	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4267884	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4301244	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4492136	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4559022	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4569897	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4626359	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4869281	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56699153	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59090200	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59238624	0.82[ASN][1000 genomes]
rs61618257	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6556909	0.82[ASN][1000 genomes]
rs6862359	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6877002	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6877070	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6877397	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6878441	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6879773	1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6880865	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6883290	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6895145	0.82[ASN][1000 genomes]
rs6895197	0.82[ASN][1000 genomes]
rs6895503	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73138312	0.82[ASN][1000 genomes]
rs73138313	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73138318	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73138324	0.82[ASN][1000 genomes]
rs73138336	0.84[ASN][1000 genomes]
rs73138348	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73138350	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73138358	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73138366	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73138380	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7447567	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7700756	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7701835	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7706272	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7707839	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7714065	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7725014	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7731306	0.82[ASN][1000 genomes]
rs7733849	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7734553	0.82[ASN][1000 genomes]
rs7735346	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7735670	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95617400-95637600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr5:95627000-95646000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:95627200-95646600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:95630600-95635400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:95631000-95634200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr5:95631200-95635200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:95631800-95635400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:95631800-95635400	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr5:95632200-95634200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr5:95632200-95634200	Enhancers	GM12878-XiMat	blood
11	chr5:95632200-95634600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:95632200-95635400	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr5:95632400-95634000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr5:95632400-95634000	Enhancers	Fetal Heart	heart
15	chr5:95632400-95634200	Enhancers	NHDF-Ad	bronchial
16	chr5:95632400-95634400	Enhancers	NHLF	lung
17	chr5:95632400-95634400	Enhancers	Osteobl	bone
18	chr5:95632400-95634600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr5:95633000-95634000	Enhancers	A549	lung
20	chr5:95633000-95634400	Enhancers	Liver	Liver
21	chr5:95633200-95634200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
22	chr5:95633200-95634600	Enhancers	Adipose Nuclei	Adipose
23	chr5:95633400-95637400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr5:95633800-95634000	Enhancers	HepG2	liver
25	chr5:95633800-95634000	Enhancers	NH-A	brain

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