Variant report

Variant	rs7725014
Chromosome Location	chr5:95664236-95664237
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:95295913..95298575-chr5:95662925..95666716,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118985	Chromatin interaction
ENSG00000251314	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10066966	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10073073	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10476669	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10866766	0.82[ASN][1000 genomes]
rs11135449	0.82[ASN][1000 genomes]
rs11135451	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11742368	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11742915	0.82[ASN][1000 genomes]
rs11749674	0.82[ASN][1000 genomes]
rs12652939	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12652970	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12653663	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12659174	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13173638	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13190432	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1423673	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1695218	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs271917	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs271918	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs271940	0.88[EUR][1000 genomes]
rs2910933	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2936431	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2936433	0.80[ASN][1000 genomes]
rs3922469	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4077817	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4267884	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4492136	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4559022	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4569897	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4869281	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56699153	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59090200	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61618257	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6877002	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6878441	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6879773	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6880865	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6883290	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6895503	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73138336	0.82[ASN][1000 genomes]
rs73138348	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73138350	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73138358	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73138366	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73138380	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7447567	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7700756	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7701835	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7707839	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7714065	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7733849	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95658000-95664800	Weak transcription	HSMM	muscle
2	chr5:95658400-95668600	Weak transcription	Aorta	Aorta
3	chr5:95659000-95666600	Weak transcription	HepG2	liver
4	chr5:95659000-95667600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:95659400-95664400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:95660800-95666000	Weak transcription	A549	lung
7	chr5:95661000-95664400	Weak transcription	NHDF-Ad	bronchial
8	chr5:95661000-95665000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:95661000-95665000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:95661000-95666000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr5:95661000-95666000	Weak transcription	NHLF	lung
12	chr5:95661000-95668400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr5:95661000-95671600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr5:95663400-95664600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr5:95663600-95667600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:95663600-95668200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr5:95663800-95665400	Weak transcription	NHEK	skin
18	chr5:95663800-95667800	Enhancers	Osteobl	bone
19	chr5:95663800-95668000	Enhancers	Muscle Satellite Cultured Cells	--
20	chr5:95663800-95671400	Weak transcription	GM12878-XiMat	blood
21	chr5:95664000-95668000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr5:95664200-95665200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr5:95664200-95668200	Enhancers	Pancreatic Islets	Pancreatic Islet

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