Variant report

Variant	rs12652939
Chromosome Location	chr5:95606175-95606176
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10066966	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10073073	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10463169	0.85[ASN][1000 genomes]
rs10476669	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10866766	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11135447	0.83[ASN][1000 genomes]
rs11135448	0.85[ASN][1000 genomes]
rs11135449	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11135451	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11742368	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11742915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11749674	0.87[ASN][1000 genomes]
rs12519062	0.85[ASN][1000 genomes]
rs12523580	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12652970	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12653663	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12659174	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13173638	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13183250	0.85[ASN][1000 genomes]
rs13190432	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13358858	0.85[ASN][1000 genomes]
rs1423673	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1695218	0.90[EUR][1000 genomes]
rs271917	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs271918	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs271940	0.90[EUR][1000 genomes]
rs2910933	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2936431	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3922469	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4077817	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4267884	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4301244	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4492136	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4559022	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4569897	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4626359	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4869281	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56699153	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59090200	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59238624	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs61618257	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6556909	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6862359	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6877002	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6877070	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6877397	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6878441	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6879773	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6880865	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6883290	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6895145	0.85[ASN][1000 genomes]
rs6895197	0.85[ASN][1000 genomes]
rs6895503	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6895664	0.83[ASN][1000 genomes]
rs73138312	0.85[ASN][1000 genomes]
rs73138313	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73138318	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73138324	0.85[ASN][1000 genomes]
rs73138336	0.87[ASN][1000 genomes]
rs73138348	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73138350	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73138358	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73138366	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73138380	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7447567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7700756	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7701835	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7706272	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7707839	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7714065	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7725014	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7731306	0.85[ASN][1000 genomes]
rs7733849	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7734553	0.85[ASN][1000 genomes]
rs7735346	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7735670	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95595400-95614800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:95605200-95606400	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links