Variant report

Variant	rs4077817
Chromosome Location	chr5:95582373-95582374
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10066966	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10073073	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10463169	0.92[ASN][1000 genomes]
rs10476669	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10866766	0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11135447	0.90[ASN][1000 genomes]
rs11135448	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11135449	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11135451	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11742368	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11742915	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11749674	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12519062	0.92[ASN][1000 genomes]
rs12523580	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12652939	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12652970	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12653663	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12659174	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13173638	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13183250	0.92[ASN][1000 genomes]
rs13190432	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13358858	0.92[ASN][1000 genomes]
rs1423673	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1498928	0.80[CHB][hapmap]
rs1695218	0.84[EUR][1000 genomes]
rs271917	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs271918	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs271940	0.84[EUR][1000 genomes]
rs2910933	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2936431	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3922469	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4267884	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4301244	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4492136	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4559022	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4569897	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4626359	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4869281	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56699153	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59090200	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59238624	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61618257	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6556909	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6862359	0.92[ASN][1000 genomes]
rs6877002	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6877070	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6877397	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6878441	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6879773	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6880865	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6883290	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6895145	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6895197	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6895503	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6895664	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73138312	0.92[ASN][1000 genomes]
rs73138313	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73138318	0.92[ASN][1000 genomes]
rs73138324	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73138336	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73138348	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73138350	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73138358	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73138366	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73138380	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7447567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7700756	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7701835	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7706272	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7707839	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7714065	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7725014	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7731306	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7733849	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7734553	0.92[ASN][1000 genomes]
rs7735346	0.92[ASN][1000 genomes]
rs7735670	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv882390	chr5:95486940-95591580	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95572200-95582800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:95578000-95584200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr5:95578200-95584000	Enhancers	Osteobl	bone
4	chr5:95578800-95582400	Weak transcription	NHLF	lung
5	chr5:95579200-95582800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:95579200-95583200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:95579200-95584400	Enhancers	HSMM	muscle
8	chr5:95579400-95583200	Enhancers	NHEK	skin
9	chr5:95579400-95584200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:95579600-95583400	Weak transcription	Right Atrium	heart
11	chr5:95579800-95582600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr5:95580000-95582400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:95580000-95583000	Weak transcription	NH-A	brain
14	chr5:95580400-95582800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr5:95580600-95582800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:95580800-95583000	Enhancers	HSMMtube	muscle
17	chr5:95581000-95583000	Enhancers	NHDF-Ad	bronchial
18	chr5:95581000-95585400	Enhancers	Fetal Lung	lung
19	chr5:95581200-95583800	Enhancers	Aorta	Aorta
20	chr5:95581200-95584000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr5:95581400-95583000	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr5:95581400-95584000	Enhancers	Brain Germinal Matrix	brain
23	chr5:95581600-95582800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr5:95581600-95582800	Weak transcription	Fetal Heart	heart
25	chr5:95581600-95582800	Weak transcription	Fetal Intestine Small	intestine
26	chr5:95581600-95583200	Enhancers	A549	lung
27	chr5:95581600-95583800	Enhancers	Gastric	stomach
28	chr5:95581600-95584200	Enhancers	Pancreas	Pancrea
29	chr5:95581800-95582400	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr5:95581800-95582800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr5:95581800-95582800	Weak transcription	Stomach Mucosa	stomach
32	chr5:95581800-95583200	Enhancers	Liver	Liver
33	chr5:95581800-95585000	Enhancers	HepG2	liver
34	chr5:95582200-95582800	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr5:95582200-95582800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr5:95582200-95583000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr5:95582200-95583200	Enhancers	HMEC	breast
38	chr5:95582200-95584200	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr5:95582200-95584200	Enhancers	Fetal Brain Female	brain
40	chr5:95582200-95585800	Enhancers	Fetal Brain Male	brain

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