Variant report

Variant	rs59090200
Chromosome Location	chr5:95564899-95564900
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:95559323..95562073-chr5:95563803..95565354,2	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10066966	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10073073	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10463169	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10476669	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10866766	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11135447	0.95[ASN][1000 genomes]
rs11135448	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11135449	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11135451	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11742368	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11742915	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11749674	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12519062	0.97[ASN][1000 genomes]
rs12523580	0.92[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12652939	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12652970	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12653663	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12659174	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13173638	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13183250	0.97[ASN][1000 genomes]
rs13190432	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13358858	0.97[ASN][1000 genomes]
rs1423673	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1695218	0.86[EUR][1000 genomes]
rs271917	0.88[EUR][1000 genomes]
rs271918	0.94[EUR][1000 genomes]
rs271940	0.86[EUR][1000 genomes]
rs2910933	0.88[EUR][1000 genomes]
rs2936431	0.92[EUR][1000 genomes]
rs3922469	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4077817	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4267884	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4301244	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4492136	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4559022	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4569897	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4626359	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4869281	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56699153	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59238624	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61618257	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6556909	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6862359	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6877002	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6877070	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6877397	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6878441	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6879773	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6880865	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6883290	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6895145	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6895197	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6895503	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6895664	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73138312	0.97[ASN][1000 genomes]
rs73138313	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73138318	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73138324	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73138336	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73138348	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73138350	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73138358	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73138366	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73138380	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7447567	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7700756	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7701835	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7706272	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7707839	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7714065	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7725014	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7731306	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7733849	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7734553	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7735346	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7735670	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv882390	chr5:95486940-95591580	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv518730	chr5:95547545-95569569	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95561800-95565200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:95562600-95566000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:95562600-95566200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:95562800-95565200	Enhancers	NHDF-Ad	bronchial
5	chr5:95562800-95565400	Enhancers	HMEC	breast
6	chr5:95562800-95565600	Weak transcription	HepG2	liver
7	chr5:95563000-95565200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:95563000-95565200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr5:95563000-95565200	Enhancers	Osteobl	bone
10	chr5:95563400-95565400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:95563800-95565000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr5:95563800-95565200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr5:95563800-95565800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr5:95564000-95565000	Weak transcription	Brain Hippocampus Middle	brain
15	chr5:95564000-95569800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr5:95564000-95571000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr5:95564200-95565000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr5:95564200-95565400	Enhancers	NHEK	skin
19	chr5:95564400-95565200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr5:95564400-95565200	Enhancers	HSMM	muscle
21	chr5:95564400-95572000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr5:95564800-95565000	Enhancers	Brain Anterior Caudate	brain
23	chr5:95564800-95565200	Enhancers	Brain Angular Gyrus	brain
24	chr5:95564800-95565400	Enhancers	Fetal Heart	heart

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