Variant report

Variant	rs2910933
Chromosome Location	chr5:95680230-95680231
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:95680220..95681123-chr5:95930949..95931827,5	MCF-7	breast:
2	chr5:95675695..95678409-chr5:95678491..95680404,2	MCF-7	breast:
3	chr5:95679934..95682177-chr5:95683139..95686030,2	MCF-7	breast:
4	chr5:95680160..95681036-chr5:95937146..95938053,5	K562	blood:
5	chr5:95680204..95681599-chr5:95936681..95938160,14	MCF-7	breast:
6	chr5:95680165..95680955-chr5:96498665..96499236,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10066966	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10073073	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10476669	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11135451	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11742368	0.88[EUR][1000 genomes]
rs12652939	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12652970	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12653663	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12659174	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13173638	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13190432	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1423673	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1695218	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs271917	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs271918	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs271940	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2936431	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2936433	0.85[ASN][1000 genomes]
rs3922469	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4077817	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4267884	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4492136	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4559022	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4569897	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4869281	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56699153	0.85[ASN][1000 genomes]
rs59090200	0.88[EUR][1000 genomes]
rs61618257	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6877002	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6878441	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6879773	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6880865	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6883290	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6895503	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73138348	0.88[EUR][1000 genomes]
rs73138350	0.88[EUR][1000 genomes]
rs73138358	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73138366	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73138380	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7447567	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7700756	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7701835	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7707839	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7714065	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7725014	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7733849	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95672200-95687400	Enhancers	Hela-S3	cervix
2	chr5:95674800-95681200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr5:95674800-95683200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr5:95674800-95686400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:95676400-95680400	Weak transcription	GM12878-XiMat	blood
6	chr5:95676400-95680800	Weak transcription	HUVEC	blood vessel
7	chr5:95676400-95683000	Weak transcription	HSMM	muscle
8	chr5:95676400-95683000	Weak transcription	Osteobl	bone
9	chr5:95676800-95681000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:95676800-95681800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:95678200-95680600	Enhancers	Liver	Liver
12	chr5:95678400-95680600	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr5:95679400-95681000	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr5:95679400-95683400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr5:95679600-95681200	Enhancers	HepG2	liver
16	chr5:95679800-95680400	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr5:95680000-95681800	Enhancers	Dnd41	blood
18	chr5:95680200-95680400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr5:95680200-95680600	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr5:95680200-95680600	Enhancers	Muscle Satellite Cultured Cells	--
21	chr5:95680200-95681800	Enhancers	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links