Variant report

Variant	rs10067274
Chromosome Location	chr5:37697379-37697380
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10055929	0.83[AMR][1000 genomes]
rs10058348	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10064268	1.00[AMR][1000 genomes]
rs10069946	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10071998	0.83[AMR][1000 genomes]
rs10072096	1.00[AMR][1000 genomes]
rs10072199	1.00[AMR][1000 genomes]
rs10074395	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10075048	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11954051	0.83[AMR][1000 genomes]
rs11957206	0.83[AMR][1000 genomes]
rs11957694	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13358095	1.00[AMR][1000 genomes]
rs13359573	0.83[AMR][1000 genomes]
rs13436949	1.00[AMR][1000 genomes]
rs2972940	1.00[AMR][1000 genomes]
rs2973065	1.00[AMR][1000 genomes]
rs2973071	1.00[AMR][1000 genomes]
rs2973072	1.00[AMR][1000 genomes]
rs2973073	0.83[AMR][1000 genomes]
rs34034635	0.83[AMR][1000 genomes]
rs7709443	0.83[AMR][1000 genomes]
rs7723792	0.83[AMR][1000 genomes]
rs7730584	1.00[AMR][1000 genomes]
rs7737381	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9292667	0.83[AMR][1000 genomes]
rs983657	1.00[AMR][1000 genomes]
rs983658	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026554	chr5:37112133-37734859	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv537726	chr5:37112133-37734859	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
4	nsv1023871	chr5:37330018-37804744	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv537729	chr5:37330018-37804744	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv432744	chr5:37374124-37743077	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv597846	chr5:37430215-37813591	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1030250	chr5:37478163-37734859	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv881383	chr5:37485316-37773877	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37682200-37698000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr5:37684400-37700000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:37684400-37705000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr5:37685200-37743200	Weak transcription	Gastric	stomach
5	chr5:37685400-37717600	Weak transcription	Pancreas	Pancrea
6	chr5:37685600-37711200	Weak transcription	Fetal Stomach	stomach
7	chr5:37685600-37727000	Weak transcription	Lung	lung
8	chr5:37687200-37720600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr5:37688400-37721400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr5:37688400-37721400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr5:37688400-37723600	Weak transcription	Placenta	Placenta
12	chr5:37689600-37726000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr5:37692200-37721200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr5:37693800-37705200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr5:37694600-37698400	Weak transcription	Dnd41	blood
16	chr5:37694800-37698400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr5:37694800-37698400	Weak transcription	Adipose Nuclei	Adipose
18	chr5:37695200-37716600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr5:37695400-37698000	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr5:37695400-37698400	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr5:37695400-37706000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr5:37695400-37715600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr5:37695400-37722600	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr5:37695600-37697400	Enhancers	Hela-S3	cervix
25	chr5:37695600-37697400	Enhancers	HMEC	breast
26	chr5:37695600-37698200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr5:37695600-37698400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr5:37695600-37702000	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr5:37695600-37703000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr5:37695600-37706400	Weak transcription	Liver	Liver
31	chr5:37695600-37721200	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr5:37695800-37697400	Enhancers	NHEK	skin
33	chr5:37695800-37705200	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr5:37696000-37697400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr5:37696000-37697400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr5:37696000-37697400	Enhancers	NHDF-Ad	bronchial
37	chr5:37696000-37697600	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr5:37696000-37717000	Weak transcription	Duodenum Mucosa	Duodenum
39	chr5:37696200-37697400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr5:37696200-37709800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr5:37696400-37697400	Enhancers	Muscle Satellite Cultured Cells	--
42	chr5:37696400-37697400	Enhancers	Osteobl	bone
43	chr5:37696400-37698400	Weak transcription	Primary B cells from cord blood	blood
44	chr5:37696400-37717200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr5:37696600-37697400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr5:37696600-37697400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr5:37696600-37697400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr5:37696600-37698200	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr5:37696600-37700200	Weak transcription	Primary B cells from peripheral blood	blood
50	chr5:37696600-37704600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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